PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55985.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 419aa MW: 46178.8 Da PI: 8.2954

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55985.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.6	1.4e-15	242	288	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+L+ GAY55985.1 242 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLK 288 5***********************9.....7***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MSQCIVPNWN LRHQQRQEQV EAEEEADIST DVNHNNNPSS SHFFPMSSNY EVAADLTWGN 60 GQLSMHGLGG IIPTTPTKPT WGRSNDTLES IVHQAAITCH NNNNNKEITL QLHGQNSPAA 120 NRSSMVSSSG TKCSESPGQV PVMPGPLKKR TRADSDQCGR DFSSMQEGRG DGSACASASA 180 TCFRENDTTM MTWASYESLK SLKTKTTDED SASHGRSENQ DEDHETKTGR SHSSKRRRTA 240 AVHNQSERRR RDRINQKMKA LQKLVPNASK TDKASMLDEV IDYLKQLKAQ VQMMNNVRNN 300 MPQMNMMMPL GMQQQLQMSL LARMGMGVGL GTGMGMLDMN TMAAAAATAR TAPQSLPPPI 360 YSPAASVTLP DPYYAFLAQS MNVELYNKMA ALFRQQVKQN TIQQAACSPS MQSNHMQGD

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MSQCIVPNWN LRHQQRQEQV EAEEEADIST DVNHNNNPSS SHFFPMSSNY EVAADLTWGN  60
GQLSMHGLGG IIPTTPTKPT WGRSNDTLES IVHQAAITCH NNNNNKEITL QLHGQNSPAA  120
NRSSMVSSSG TKCSESPGQV PVMPGPLKKR TRADSDQCGR DFSSMQEGRG DGSACASASA  180
TCFRENDTTM MTWASYESLK SLKTKTTDED SASHGRSENQ DEDHETKTGR SHSSKRRRTA  240
AVHNQSERRR RDRINQKMKA LQKLVPNASK TDKASMLDEV IDYLKQLKAQ VQMMNNVRNN  300
MPQMNMMMPL GMQQQLQMSL LARMGMGVGL GTGMGMLDMN TMAAAAATAR TAPQSLPPPI  360
YSPAASVTLP DPYYAFLAQS MNVELYNKMA ALFRQQVKQN TIQQAACSPS MQSNHMQGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	251	KRRRTAAVHNQSERRRR
2	236	252	KRRRTAAVHNQSERRRR
3	247	252	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	9e-38	bHLH family protein