PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55674.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 408aa MW: 44946.5 Da PI: 6.7517

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55674.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.5e-08	248	295	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq GAY55674.1 248 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 295 8*************************9....888999999999999999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MEPTEHGSSA IGPSLDQNAL DSLQFNEEIQ HLMTLPPENA NSFTALLELP APQAVELLHH 60 HHHRSPESNC STAKLVTAKA DGHGLHHPHA TPHHFNPGAN LTFPSDISLI ERAVRFSVFA 120 GINNSDNNHN DNNNNNHKIS SKIDKNNNNN NCSPETTGSV PSNSSGNLGK VKNEPAESDS 180 DNNNPNSPQP LDIKTENQNQ KSAKRKEREK KGKAATKKSK SGANDSSEDA EKLPYVHVRA 240 RRGQATDSHS LAERARREKI NARMKLLQEL VPGCNKISGT ALVLDEIINH VQSLQRQVEF 300 LSMRLAAVNP RIDFNLDSLF VAESGSLIDS SFPGVVMPVM WPELQAHGNR QQYQQQWHHF 360 DGHHQPLLGG AEESHNFVTP ENSLLSYDSS ANSGREELIP HQKEGGKN

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MEPTEHGSSA IGPSLDQNAL DSLQFNEEIQ HLMTLPPENA NSFTALLELP APQAVELLHH  60
HHHRSPESNC STAKLVTAKA DGHGLHHPHA TPHHFNPGAN LTFPSDISLI ERAVRFSVFA  120
GINNSDNNHN DNNNNNHKIS SKIDKNNNNN NCSPETTGSV PSNSSGNLGK VKNEPAESDS  180
DNNNPNSPQP LDIKTENQNQ KSAKRKEREK KGKAATKKSK SGANDSSEDA EKLPYVHVRA  240
RRGQATDSHS LAERARREKI NARMKLLQEL VPGCNKISGT ALVLDEIINH VQSLQRQVEF  300
LSMRLAAVNP RIDFNLDSLF VAESGSLIDS SFPGVVMPVM WPELQAHGNR QQYQQQWHHF  360
DGHHQPLLGG AEESHNFVTP ENSLLSYDSS ANSGREELIP HQKEGGKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-87	bHLH family protein