PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GAY55587.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 179aa MW: 20590.4 Da PI: 7.4414 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.3e-19 | 16 | 69 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +R ++t++q++ Le++F+ n++++ +++ eLA++lgL+ rq+ vW+qNrRa+ek GAY55587.1 16 SRKRLTQDQVRLLETCFNANQKLQVDRKLELARRLGLPPRQIAVWYQNRRAREK 69 6999************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 103 | 2.6e-33 | 17 | 107 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++rl+++qv+lLE++F++++kL+ +rK elar+Lgl prq+avW+qnrRAR k + +E dy+++++++d++ +en++Le+ev L++elk+ GAY55587.1 17 RKRLTQDQVRLLETCFNANQKLQVDRKLELARRLGLPPRQIAVWYQNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKK 107 79*************************************************************************************9986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 179 aa Download sequence |
MDLQFSSENR QPSKLSRKRL TQDQVRLLET CFNANQKLQV DRKLELARRL GLPPRQIAVW 60 YQNRRAREKI HTIELDYKTI QQELDNVLAE NRKLEQEVGM LKHELKKSQQ MLLASNPSAT 120 LLPSVSTSGD NDLTSSSSPL NMTCNWEDTG LLPMDELYSC LIRPQGQPEN HSMNDLSIV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53980.1 | 4e-32 | HD-ZIP family protein |