PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY54970.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

DBB

Protein Properties

Length: 408aa MW: 44730.3 Da PI: 5.3893

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY54970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.4	2.3e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC +C ++ H H++vpl GAY54970.1 4 QCNVCEAAEAKVLCCADEAALCWECDDKVHAAnklaskHQRVPL 47 6****99*******************66899999999986 PP
2	zf-B_box	27	9e-09	53	94	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++kC+ ++e +fC +++ llC++C +++H H GAY54970.1 53 QMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTAnsyvsaH 94 799*****99*******************554555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MRIQCNVCEA AEAKVLCCAD EAALCWECDD KVHAANKLAS KHQRVPLSSS STQMPKCDIC 60 QETSGFFFCL QDRALLCRKC DVAIHTANSY VSAHQRFLLT GVKVALEPAD PGASSSSIKS 120 LSGENILDMK SHSLSRRDAL MPVAAECKEV LPASSGGVGD FAMNKVSFAG GSAAGSTPSW 180 HMDDFLALPE LNQNYSFMDN GSSKVTHTYN GKSYLIFSWS NISKKITFIL SLLHVHSCMI 240 MHVDFIVESL PINLIESQEE LQLAHSSMMT SLVEGNLLAF VTEDFIKKAT NDENVSSLEF 300 DVDQSDPNDT GSKFIRFGGN RNKSADSGKR GDSDSSSILR SAEEELDDDE CLGQVPEASW 360 AVPQVPSPPT ASGLYWPKYP QNQYDSAFVP DIHHHSQLNR TATRRRLQ

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MRIQCNVCEA AEAKVLCCAD EAALCWECDD KVHAANKLAS KHQRVPLSSS STQMPKCDIC  60
QETSGFFFCL QDRALLCRKC DVAIHTANSY VSAHQRFLLT GVKVALEPAD PGASSSSIKS  120
LSGENILDMK SHSLSRRDAL MPVAAECKEV LPASSGGVGD FAMNKVSFAG GSAAGSTPSW  180
HMDDFLALPE LNQNYSFMDN GSSKVTHTYN GKSYLIFSWS NISKKITFIL SLLHVHSCMI  240
MHVDFIVESL PINLIESQEE LQLAHSSMMT SLVEGNLLAF VTEDFIKKAT NDENVSSLEF  300
DVDQSDPNDT GSKFIRFGGN RNKSADSGKR GDSDSSSILR SAEEELDDDE CLGQVPEASW  360
AVPQVPSPPT ASGLYWPKYP QNQYDSAFVP DIHHHSQLNR TATRRRLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	2e-70	DBB family protein