PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY54317.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ARF

Protein Properties

Length: 815aa MW: 89969.7 Da PI: 6.3853

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY54317.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.6	1.2e-23	45	146	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ + +++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l GAY54317.1 45 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 139 99**************************97544444..48********************************************..8899999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ GAY54317.1 140 LLGIRRA 146 **997 PP
2	Auxin_resp	121.8	5e-40	171	254	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k GAY54317.1 171 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 254 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence
MHADVETDEV YAQMTLQPLS PQEQKDVYLL PAELGAPNKQ PTNYFCKTLT ASDTSTHGGF 60 SVPRRAAEKV FPPLDYSQTP PAQELIARDL HDNEWKFRHI FRGQPKRHLL TTGWSVFVSA 120 KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR 180 FTIFYNPRAS PSEFVIPLAK YVKAVYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL 240 DPVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYSSPFPLR LKRPWPSGLP 300 SFHGMKDGDM SINSPLMWLQ GGVGDQGIQS LNFQGYGVTP WMQPRLDASI PGLQPDVYQA 360 MAAAALQEMR TVDSSKLASQ SLLQFQQSQN VSNGTASMIP RQMLQQSQAQ NALLQSFQEN 420 HASAQAQLLQ QQLQRQHSYN EQRQQQQQVQ QSQQLHQLSV QPQISNVIST LPHLASSSQS 480 QPPTLQTVAS QCQQSNFSDS LGNPIASSDV SSMHTILGSL SQAGASHLLN SNASNPIISS 540 SAMLTKQVTV DNHVPSAVSQ CILPQVEQLG AQQSNVSELT SLLPPFPGRE YSSYHGSGDP 600 QNNLLFGVSI DSSLMGQNGL PNLKNISSEN ESLSLPYAAS NFTNNVGTDF PLNSDMTTSS 660 CVDESGFLQS SENVDQVNPP TRTFVKVHKS GSFGRSLDIS KFSSYDELRG ELARMFGLEG 720 QLEDPQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVGYIK ILSPLEVQQM GKGLSPVTSG 780 PGQRLSSNNN FDDYVSRQEL RSSSNGVASM GSINY

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence

MHADVETDEV YAQMTLQPLS PQEQKDVYLL PAELGAPNKQ PTNYFCKTLT ASDTSTHGGF  60
SVPRRAAEKV FPPLDYSQTP PAQELIARDL HDNEWKFRHI FRGQPKRHLL TTGWSVFVSA  120
KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR  180
FTIFYNPRAS PSEFVIPLAK YVKAVYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL  240
DPVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYSSPFPLR LKRPWPSGLP  300
SFHGMKDGDM SINSPLMWLQ GGVGDQGIQS LNFQGYGVTP WMQPRLDASI PGLQPDVYQA  360
MAAAALQEMR TVDSSKLASQ SLLQFQQSQN VSNGTASMIP RQMLQQSQAQ NALLQSFQEN  420
HASAQAQLLQ QQLQRQHSYN EQRQQQQQVQ QSQQLHQLSV QPQISNVIST LPHLASSSQS  480
QPPTLQTVAS QCQQSNFSDS LGNPIASSDV SSMHTILGSL SQAGASHLLN SNASNPIISS  540
SAMLTKQVTV DNHVPSAVSQ CILPQVEQLG AQQSNVSELT SLLPPFPGRE YSSYHGSGDP  600
QNNLLFGVSI DSSLMGQNGL PNLKNISSEN ESLSLPYAAS NFTNNVGTDF PLNSDMTTSS  660
CVDESGFLQS SENVDQVNPP TRTFVKVHKS GSFGRSLDIS KFSSYDELRG ELARMFGLEG  720
QLEDPQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVGYIK ILSPLEVQQM GKGLSPVTSG  780
PGQRLSSNNN FDDYVSRQEL RSSSNGVASM GSINY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.2	0.0	ARF family protein