PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY53406.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-X1

Protein Properties

Length: 1038aa MW: 112487 Da PI: 8.0181

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY53406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	16.4	2e-05	294	311	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C+++CH+GpC+ C GAY53406.1 294 CGHHSCGEICHPGPCGDC 311 ****************99 PP
2	zf-NF-X1	23.7	1.1e-07	352	370	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H C +lCH G+CppC GAY53406.1 352 CGLHYCDELCHAGNCPPCL 370 ******************6 PP
3	zf-NF-X1	18.7	3.8e-06	447	465	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC GAY53406.1 447 CGQHSCESLCHSGHCPPCL 465 ******************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1038 aa Download sequence
MPTPDDNQHS RNIAPRVQNG QFTNHHRGRA RGENQDKKLP KDLDLPQLLQ EIQDKLMKSK 60 VECMICYDMV KRSAPIWSCS SCFSIFHLSC IKKWARAPTS ADLSAERSQG FNWRCPGCQS 120 VQLTSSKEIR YVCFCGKRTD PTSDFYLTPH SCGEPCGKPL ESKISSAGGS EEDLCPHKCV 180 LQCHPGPCPP CKAFAPPRLC PCGKKMITTR CFDRKSVLTC GQQCNKHLEC WRHKCEKICH 240 VGPCGPCRVL VNASCFCKKK VEVVLCGDMA VKGEVKAEAG VFSCSSTCGK KLSCGHHSCG 300 EICHPGPCGD CELLPSKIKS CFCGKMSLQE QRKSCLDPIP ACSEKCGKPL ACGLHYCDEL 360 CHAGNCPPCL AAVTQKCRCG STSRNVECYR TTGGENFTCE KACGRKKNCG RHRCSERCCP 420 LSSSNSLLSG DWDPHFCQMA CGKKLRCGQH SCESLCHSGH CPPCLETIFT DLTCACGRTS 480 FPPPLPCGTP PPSCQLPCSV PQPCGHSASH SCHFGDCPPC SVPIAKECIG GHVVLRNVPC 540 GSKDIRCNKL CGKTRQCGMH ACGRTCHLPP CDTACNSEPG SKASCGQVCG APRRDCRHTC 600 TALCHPSALC PDVRCEFPFT ITCSCGRITA SVPCDAGGSS SGYSSDTVYE ASIVQKLPAP 660 LQPVESTGKK IPLGQRKLMC DDECAKLERK RVLADAFEIT TPNLDALHFG ESAVTELLAD 720 LYRRDPKWVL SVEERCKFLV LGKNRGSTSA LKVHVFCPML KDKRDAVRLI AERWKLAVNP 780 AGWEPKRFIV VHVTPKSKPP PRVIGVKGAT TVNAPHAPVF DPLVDMDPRL VVSFLDLPRE 840 SDISALVLRF GGECELVWLN DKNALAVFSD PARAATATRR LDHGSVYYGA VVVQNVGAPS 900 TANAWGGPGT VKEVGALSSQ RGNPWKKAVV QEMAWREDSW GEEESSAGSG DVQASAWKNK 960 EAPIAASINR WSVLDSETLS YSSPVSIRTE EPAKQSASQS NKGGESNASS VNVAGQPASS 1020 FSETELSEVV DDWEKAYD

Sequence ? help Back to Top

Protein Sequence Length: 1038 aa Download sequence

MPTPDDNQHS RNIAPRVQNG QFTNHHRGRA RGENQDKKLP KDLDLPQLLQ EIQDKLMKSK  60
VECMICYDMV KRSAPIWSCS SCFSIFHLSC IKKWARAPTS ADLSAERSQG FNWRCPGCQS  120
VQLTSSKEIR YVCFCGKRTD PTSDFYLTPH SCGEPCGKPL ESKISSAGGS EEDLCPHKCV  180
LQCHPGPCPP CKAFAPPRLC PCGKKMITTR CFDRKSVLTC GQQCNKHLEC WRHKCEKICH  240
VGPCGPCRVL VNASCFCKKK VEVVLCGDMA VKGEVKAEAG VFSCSSTCGK KLSCGHHSCG  300
EICHPGPCGD CELLPSKIKS CFCGKMSLQE QRKSCLDPIP ACSEKCGKPL ACGLHYCDEL  360
CHAGNCPPCL AAVTQKCRCG STSRNVECYR TTGGENFTCE KACGRKKNCG RHRCSERCCP  420
LSSSNSLLSG DWDPHFCQMA CGKKLRCGQH SCESLCHSGH CPPCLETIFT DLTCACGRTS  480
FPPPLPCGTP PPSCQLPCSV PQPCGHSASH SCHFGDCPPC SVPIAKECIG GHVVLRNVPC  540
GSKDIRCNKL CGKTRQCGMH ACGRTCHLPP CDTACNSEPG SKASCGQVCG APRRDCRHTC  600
TALCHPSALC PDVRCEFPFT ITCSCGRITA SVPCDAGGSS SGYSSDTVYE ASIVQKLPAP  660
LQPVESTGKK IPLGQRKLMC DDECAKLERK RVLADAFEIT TPNLDALHFG ESAVTELLAD  720
LYRRDPKWVL SVEERCKFLV LGKNRGSTSA LKVHVFCPML KDKRDAVRLI AERWKLAVNP  780
AGWEPKRFIV VHVTPKSKPP PRVIGVKGAT TVNAPHAPVF DPLVDMDPRL VVSFLDLPRE  840
SDISALVLRF GGECELVWLN DKNALAVFSD PARAATATRR LDHGSVYYGA VVVQNVGAPS  900
TANAWGGPGT VKEVGALSSQ RGNPWKKAVV QEMAWREDSW GEEESSAGSG DVQASAWKNK  960
EAPIAASINR WSVLDSETLS YSSPVSIRTE EPAKQSASQS NKGGESNASS VNVAGQPASS  1020
FSETELSEVV DDWEKAYD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein