PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY52080.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 1986aa MW: 218301 Da PI: 8.0977

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY52080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9e-06	1852	1873	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tG C G++C+ +H++ GAY52080.1 1852 CPTFKATGSCALGAKCRLHHPK 1873 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1986 aa Download sequence
MSHGFSVRSS IKFQFSPNFS PNPKPQNQYH HQRSNDFAHR ISINDDRLQQ HQQTDRRHHH 60 HRQHPVADFE ARQDVWDRHP RIQPDHRPVV SSLDRHHEFD HRPLSPYRSM DKIKHELDTT 120 SYRFRERYSN DVVQFEHTSS NNSNQRVDFV SHRSQFVSTS DRLNSSNYDN QHGSQFDSNE 180 LMSNNVRDVG LNRPVFKERE SRDSLLGRGS NSENSGDGVR AFSGKREFYA SDAGRYGNNR 240 GSREHSYEYN RTPRKQVQKK SALLRIQKPY YRNRDDGELH HLNYEIKSGS FRGKDQVVFS 300 DRDVGEHEQR EGSPVELDVS FKSNSLVAKA IVATSSSVSD TNLTPKKGNT RKIVMSNKDH 360 SSLQMNKPLD SSRKLGGSRD AVNNALVSED KDSKQAEKKV APSCANKCDT NSNPCSSGSN 420 TSPAKITVEK LKSIVPEKCG TTKTSALKVA KKKKVAKRVV KKAINPTVHV SGSQPTEKLD 480 ELLKADASTL GAPAASVLKM GVKPSKDKIS SAAMASGHLD DLQAYTYEAN MSPGTEQVGG 540 SPETAMVSKE VSTDGDSCAP CVTKIKRKRS GSISPLACSS HKETKIDEGS VNADGCLHVL 600 NTASNFDKDL TKLLNETNFS DIGGLEGADK HFCHNGHSLL HENSETKEYS DPLLREGRNI 660 NSDLKSLEEI RRHEVHPNTC SSAHGMNTTT SCNIGLLSSQ EKMTDSEVGI LNASSKQPCK 720 GQMSSSVNSS TVEGFPSIML PGRCEISAFS SSEETDFHNA STHVDRSNGD KGSCSGSDRV 780 IINSEEINPG TGDYNGRQLA TNEVTIAIEG GHAGGLANTM FSVGSREFGM SNNTDKCKVM 840 TSVSDLPDAM VSDMDTGPVK AFSSVQSLNT ALSVKDSFPV EVRVTEGLDV GLQSSSDGLS 900 VFRGHNSTGG CSDANVSESS GLNGSSPENR KRRKVSANHP GFTSEIVPQI SEGPVTPDLS 960 TSGVELPSNS TEGQMHPEEG VAVSNMDTLC DSSLPPCPDG ITVLLDSGSA QISSEVAVSV 1020 HTNASGFGDD SLKVEPRIVE PSLAFGESDN ANVRTTCPPG SEGKQIVNED PVVDGTNYNN 1080 EDMCTEKSKM ENIEAFVVEE QVKACNVTTE FETPEHQSSD LNKILPATDV ESDCCLLERG 1140 DLSRAYRALV ADGDGVSTTN SYDEMMEFDS ISELGSPEIL STVPVMNALN HEASASQISN 1200 EKVCRIEKIP SEEPVDEGFF NLSAHTSPSE HAKINLKLDD MLESAHLVAQ RIVSLPAQDV 1260 KDTGLTLNPM SGETNGKKHQ ASHCVSRIHP RRSSSVFTAS RDLASSTRTT CTTRPRTWHR 1320 TESSSASPAP GNKSLLPPQN QLPKKVAKFQ SMSYIRKGNS LVRKPAPVAA VSQISHGLTS 1380 SVYWLNSSGI GESKKTRGSE GGADVVDPPS FLRGVNAPLE RPRTPPLPVV AKVPNHATSS 1440 TGDYTSSPVA EPLPNGCSET KSDTQKLMEI NDELNFSNAA LNISKTPVNQ TGSVNGLESQ 1500 VSLADGSFTS EGEKCAKDIF RRSDMSQSYK AVKKICKPIR FSLVWTLNSM QSSKSDDHFL 1560 YRGKVLPSLF PWKRTLYWRR FVQDPVSISN NSSLSAISRK LLLLRKRDTV YTRSNHGFSL 1620 RKYKVLSVGG SSLKWSKSIE NRSKKVNEEA TLAVAAVEKK RQENGAESFA SETKIRIRSC 1680 RERIFRIGSV RYKMDSSRRT LQRISDMFEL AMATSLLEIQ RDELVFWQVK KWSLHTARLR 1740 LARKRKYCQF FTRFGKCNKD NGKCPYIHDP SKIAVCTKFL KGLCSNSDCK LTHKVIPERM 1800 PDCSYFLQGL CTNKNCPYRH VHVNPNASTC EGFLKGYCAD GDECRKKHSY VCPTFKATGS 1860 CALGAKCRLH HPKSRSNGKK SRRSRKPKNT HGRYFGSMLV EDSESQTAMS ERPTVQNNGN 1920 LFVEGKLVDY IGLDVSDKEA GETNDALHEL LDFNDSGASE LQLDDLDELI KPIRIMNSHP 1980 SSYSTG

Sequence ? help Back to Top

Protein Sequence Length: 1986 aa Download sequence

MSHGFSVRSS IKFQFSPNFS PNPKPQNQYH HQRSNDFAHR ISINDDRLQQ HQQTDRRHHH  60
HRQHPVADFE ARQDVWDRHP RIQPDHRPVV SSLDRHHEFD HRPLSPYRSM DKIKHELDTT  120
SYRFRERYSN DVVQFEHTSS NNSNQRVDFV SHRSQFVSTS DRLNSSNYDN QHGSQFDSNE  180
LMSNNVRDVG LNRPVFKERE SRDSLLGRGS NSENSGDGVR AFSGKREFYA SDAGRYGNNR  240
GSREHSYEYN RTPRKQVQKK SALLRIQKPY YRNRDDGELH HLNYEIKSGS FRGKDQVVFS  300
DRDVGEHEQR EGSPVELDVS FKSNSLVAKA IVATSSSVSD TNLTPKKGNT RKIVMSNKDH  360
SSLQMNKPLD SSRKLGGSRD AVNNALVSED KDSKQAEKKV APSCANKCDT NSNPCSSGSN  420
TSPAKITVEK LKSIVPEKCG TTKTSALKVA KKKKVAKRVV KKAINPTVHV SGSQPTEKLD  480
ELLKADASTL GAPAASVLKM GVKPSKDKIS SAAMASGHLD DLQAYTYEAN MSPGTEQVGG  540
SPETAMVSKE VSTDGDSCAP CVTKIKRKRS GSISPLACSS HKETKIDEGS VNADGCLHVL  600
NTASNFDKDL TKLLNETNFS DIGGLEGADK HFCHNGHSLL HENSETKEYS DPLLREGRNI  660
NSDLKSLEEI RRHEVHPNTC SSAHGMNTTT SCNIGLLSSQ EKMTDSEVGI LNASSKQPCK  720
GQMSSSVNSS TVEGFPSIML PGRCEISAFS SSEETDFHNA STHVDRSNGD KGSCSGSDRV  780
IINSEEINPG TGDYNGRQLA TNEVTIAIEG GHAGGLANTM FSVGSREFGM SNNTDKCKVM  840
TSVSDLPDAM VSDMDTGPVK AFSSVQSLNT ALSVKDSFPV EVRVTEGLDV GLQSSSDGLS  900
VFRGHNSTGG CSDANVSESS GLNGSSPENR KRRKVSANHP GFTSEIVPQI SEGPVTPDLS  960
TSGVELPSNS TEGQMHPEEG VAVSNMDTLC DSSLPPCPDG ITVLLDSGSA QISSEVAVSV  1020
HTNASGFGDD SLKVEPRIVE PSLAFGESDN ANVRTTCPPG SEGKQIVNED PVVDGTNYNN  1080
EDMCTEKSKM ENIEAFVVEE QVKACNVTTE FETPEHQSSD LNKILPATDV ESDCCLLERG  1140
DLSRAYRALV ADGDGVSTTN SYDEMMEFDS ISELGSPEIL STVPVMNALN HEASASQISN  1200
EKVCRIEKIP SEEPVDEGFF NLSAHTSPSE HAKINLKLDD MLESAHLVAQ RIVSLPAQDV  1260
KDTGLTLNPM SGETNGKKHQ ASHCVSRIHP RRSSSVFTAS RDLASSTRTT CTTRPRTWHR  1320
TESSSASPAP GNKSLLPPQN QLPKKVAKFQ SMSYIRKGNS LVRKPAPVAA VSQISHGLTS  1380
SVYWLNSSGI GESKKTRGSE GGADVVDPPS FLRGVNAPLE RPRTPPLPVV AKVPNHATSS  1440
TGDYTSSPVA EPLPNGCSET KSDTQKLMEI NDELNFSNAA LNISKTPVNQ TGSVNGLESQ  1500
VSLADGSFTS EGEKCAKDIF RRSDMSQSYK AVKKICKPIR FSLVWTLNSM QSSKSDDHFL  1560
YRGKVLPSLF PWKRTLYWRR FVQDPVSISN NSSLSAISRK LLLLRKRDTV YTRSNHGFSL  1620
RKYKVLSVGG SSLKWSKSIE NRSKKVNEEA TLAVAAVEKK RQENGAESFA SETKIRIRSC  1680
RERIFRIGSV RYKMDSSRRT LQRISDMFEL AMATSLLEIQ RDELVFWQVK KWSLHTARLR  1740
LARKRKYCQF FTRFGKCNKD NGKCPYIHDP SKIAVCTKFL KGLCSNSDCK LTHKVIPERM  1800
PDCSYFLQGL CTNKNCPYRH VHVNPNASTC EGFLKGYCAD GDECRKKHSY VCPTFKATGS  1860
CALGAKCRLH HPKSRSNGKK SRRSRKPKNT HGRYFGSMLV EDSESQTAMS ERPTVQNNGN  1920
LFVEGKLVDY IGLDVSDKEA GETNDALHEL LDFNDSGASE LQLDDLDELI KPIRIMNSHP  1980
SSYSTG