PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY51050.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 916aa MW: 101518 Da PI: 8.5578

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY51050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	821	879	1	47
TSSS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47 r++W +eE ++l++ +l ++ Wk I+ ++ +Rt+ qcksrw ++ GAY51050.1 821 RNKWRPEEVKKLIKMRGELHSKfqivkgrmaLWKEISTHLAnegFNRTPSQCKSRWSSL 879 799***************************************99********876 PP
2	trihelix	67.3	3e-21	823	902	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +ev++Li++r e++++++ k +++lW+e+s +++ +gf+r+p qCk++w++l ++y++ k g+++ +++pyf++++ GAY51050.1 823 KWRPEEVKKLIKMRGELHSKFQIVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKSGNSQ------KSWPYFEEMN 902 7*****************************************************************98......46*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence
MQLGLLGSYS FSYSVYLASS SSSSSSSTLN KVSANMAALS ALSLSPYNFL CKPIPRIRRS 60 ISCSIDTPTT LGARESKVPR RRTGRTEGPR KSMEDSVQRK MEQFYEGSNG PPLRVLPIGG 120 LGEIGMNCML VGNYDRYILI DAGVMFPDYD ELGVQKITPD TTFIKRWSHK IEAVVITHGH 180 EDHIGALPWV IPALDSNTPI YASSFTMELI RKRLKENGIF VPSRLKTFKT RRKFMAGPFE 240 IEPIRVTHSI PDCCGLVLRC ADGTILHTGD WKIDESPLDG KVFDREALEE LSKEGVTLMM 300 SDSTNVLSPG RTTSESVVKD ALMRHVSAAK GRVITTQFAS NIHRLGSVKA AADLTGRKLV 360 FVGMSLRTYL DAAWKDGKAP IDPSTLVKVE DIDAYAPKDL LIVTTGSQAE PRAALNLASY 420 GGSHSLKLTN EDVILYSAKV IPGNESRVMK MLNRISEIGS TIVMGRNEGL HTSGHGYRGE 480 LEEVLKLVKP QHFLPIHGEL LFLKEHELLG RSTGIRHSTV IKNGEMLGVS HLRNRRVLSN 540 GFISLGKENL QLMYSDGDKA FGTSTELCID ERLRIASDGI IVVSMEILRP QHTDGQSGYS 600 LKGKIRITTR CLWLDKGKLL DALHNAAHAA LSSCPVNCPL AHMEKTVSEV LRKVVRKYSS 660 KRPEVIAVAM ENPAAVLSDE LNARLSGNSH VGFGMPALRK MVDRHPKRSQ LSRTQAEGDG 720 RQQNLQVDGI EVEELPEETT TTSSSDHGER LSLDSEDSDE FWKSFVAPAS PINSLVKGNN 780 VLIPQEEQQM SELEEDGTEI SDDDSSERSS SQPKPSKGVR RNKWRPEEVK KLIKMRGELH 840 SKFQIVKGRM ALWKEISTHL ANEGFNRTPS QCKSRWSSLL QKYEESKSGN SQKSWPYFEE 900 MNKIFSDSDS EAMATK

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence

MQLGLLGSYS FSYSVYLASS SSSSSSSTLN KVSANMAALS ALSLSPYNFL CKPIPRIRRS  60
ISCSIDTPTT LGARESKVPR RRTGRTEGPR KSMEDSVQRK MEQFYEGSNG PPLRVLPIGG  120
LGEIGMNCML VGNYDRYILI DAGVMFPDYD ELGVQKITPD TTFIKRWSHK IEAVVITHGH  180
EDHIGALPWV IPALDSNTPI YASSFTMELI RKRLKENGIF VPSRLKTFKT RRKFMAGPFE  240
IEPIRVTHSI PDCCGLVLRC ADGTILHTGD WKIDESPLDG KVFDREALEE LSKEGVTLMM  300
SDSTNVLSPG RTTSESVVKD ALMRHVSAAK GRVITTQFAS NIHRLGSVKA AADLTGRKLV  360
FVGMSLRTYL DAAWKDGKAP IDPSTLVKVE DIDAYAPKDL LIVTTGSQAE PRAALNLASY  420
GGSHSLKLTN EDVILYSAKV IPGNESRVMK MLNRISEIGS TIVMGRNEGL HTSGHGYRGE  480
LEEVLKLVKP QHFLPIHGEL LFLKEHELLG RSTGIRHSTV IKNGEMLGVS HLRNRRVLSN  540
GFISLGKENL QLMYSDGDKA FGTSTELCID ERLRIASDGI IVVSMEILRP QHTDGQSGYS  600
LKGKIRITTR CLWLDKGKLL DALHNAAHAA LSSCPVNCPL AHMEKTVSEV LRKVVRKYSS  660
KRPEVIAVAM ENPAAVLSDE LNARLSGNSH VGFGMPALRK MVDRHPKRSQ LSRTQAEGDG  720
RQQNLQVDGI EVEELPEETT TTSSSDHGER LSLDSEDSDE FWKSFVAPAS PINSLVKGNN  780
VLIPQEEQQM SELEEDGTEI SDDDSSERSS SQPKPSKGVR RNKWRPEEVK KLIKMRGELH  840
SKFQIVKGRM ALWKEISTHL ANEGFNRTPS QCKSRWSSLL QKYEESKSGN SQKSWPYFEE  900
MNKIFSDSDS EAMATK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein