PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY51049.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 916aa MW: 101518 Da PI: 8.5578 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 821 | 879 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47 r++W +eE ++l++ +l ++ Wk I+ ++ +Rt+ qcksrw ++ GAY51049.1 821 RNKWRPEEVKKLIKMRGELHSKfqivkgrmaLWKEISTHLAnegFNRTPSQCKSRWSSL 879 799*****************************************99**********876 PP | |||||||
2 | trihelix | 67.3 | 3e-21 | 823 | 902 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +ev++Li++r e++++++ k +++lW+e+s +++ +gf+r+p qCk++w++l ++y++ k g+++ +++pyf++++ GAY51049.1 823 KWRPEEVKKLIKMRGELHSKFQIVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKSGNSQ------KSWPYFEEMN 902 7*******************************************************************98......46*******7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 916 aa Download sequence |
MQLGLLGSYS FSYSVYLASS SSSSSSSTLN KVSANMAALS ALSLSPYNFL CKPIPRIRRS 60 ISCSIDTPTT LGARESKVPR RRTGRTEGPR KSMEDSVQRK MEQFYEGSNG PPLRVLPIGG 120 LGEIGMNCML VGNYDRYILI DAGVMFPDYD ELGVQKITPD TTFIKRWSHK IEAVVITHGH 180 EDHIGALPWV IPALDSNTPI YASSFTMELI RKRLKENGIF VPSRLKTFKT RRKFMAGPFE 240 IEPIRVTHSI PDCCGLVLRC ADGTILHTGD WKIDESPLDG KVFDREALEE LSKEGVTLMM 300 SDSTNVLSPG RTTSESVVKD ALMRHVSAAK GRVITTQFAS NIHRLGSVKA AADLTGRKLV 360 FVGMSLRTYL DAAWKDGKAP IDPSTLVKVE DIDAYAPKDL LIVTTGSQAE PRAALNLASY 420 GGSHSLKLTN EDVILYSAKV IPGNESRVMK MLNRISEIGS TIVMGRNEGL HTSGHGYRGE 480 LEEVLKLVKP QHFLPIHGEL LFLKEHELLG RSTGIRHSTV IKNGEMLGVS HLRNRRVLSN 540 GFISLGKENL QLMYSDGDKA FGTSTELCID ERLRIASDGI IVVSMEILRP QHTDGQSGYS 600 LKGKIRITTR CLWLDKGKLL DALHNAAHAA LSSCPVNCPL AHMEKTVSEV LRKVVRKYSS 660 KRPEVIAVAM ENPAAVLSDE LNARLSGNSH VGFGMPALRK MVDRHPKRSQ LSRTQAEGDG 720 RQQNLQVDGI EVEELPEETT TTSSSDHGER LSLDSEDSDE FWKSFVAPAS PINSLVKGNN 780 VLIPQEEQQM SELEEDGTEI SDDDSSERSS SQPKPSKGVR RNKWRPEEVK KLIKMRGELH 840 SKFQIVKGRM ALWKEISTHL ANEGFNRTPS QCKSRWSSLL QKYEESKSGN SQKSWPYFEE 900 MNKIFSDSDS EAMATK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |