PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50741.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 547aa MW: 59365.6 Da PI: 6.26

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50741.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.6e-09	353	400	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq GAY50741.1 353 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 400 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MENEFFLNAG IPAPVAMPIW PSAAMEIQIQ ATNEMMNCSS EQSSDCFFNP NNWEKSTDHS 60 LQFDSALSSI VSSPAASNSN ISNESSVIRE LIGKLGNIGN NSGAGEITPN SLAPYINNNS 120 NNNNGSSSTN ASCYTTPLNS PPKLNLPMSL GNSMPLNSSV AEFSADPGFA ERAARFSRFG 180 SRSFNGRSTG QFVPNHNPDQ FGLSRSNNNP NPMTANEKLP RVSSSPSLKV LGSQAQATGN 240 KSPQDRSELA NSQEESSVSE QVPNDFNSRK RKAVSKGKGK ETAASPSEAE ANASESSKNK 300 RCKPNEGKAN GNGAVKAEDE GDDKQAKANN AKPPEPPKDY IHVRARRGQA TDSHSLAERV 360 RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ RQVEFLSMKL ASVNTRLELN 420 VDALMSKDIY QPNKPLPHSI FQIDSSASAF FSHQPQQNPA LHGNISNGTM TQCPVDPLDN 480 ALCRNLSMQL PQLEQFTETI PQFQNFGEDD LQSIVQMGFG QNPNSETSLQ SQSFHGSNQA 540 PHMKAEL

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MENEFFLNAG IPAPVAMPIW PSAAMEIQIQ ATNEMMNCSS EQSSDCFFNP NNWEKSTDHS  60
LQFDSALSSI VSSPAASNSN ISNESSVIRE LIGKLGNIGN NSGAGEITPN SLAPYINNNS  120
NNNNGSSSTN ASCYTTPLNS PPKLNLPMSL GNSMPLNSSV AEFSADPGFA ERAARFSRFG  180
SRSFNGRSTG QFVPNHNPDQ FGLSRSNNNP NPMTANEKLP RVSSSPSLKV LGSQAQATGN  240
KSPQDRSELA NSQEESSVSE QVPNDFNSRK RKAVSKGKGK ETAASPSEAE ANASESSKNK  300
RCKPNEGKAN GNGAVKAEDE GDDKQAKANN AKPPEPPKDY IHVRARRGQA TDSHSLAERV  360
RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ RQVEFLSMKL ASVNTRLELN  420
VDALMSKDIY QPNKPLPHSI FQIDSSASAF FSHQPQQNPA LHGNISNGTM TQCPVDPLDN  480
ALCRNLSMQL PQLEQFTETI PQFQNFGEDD LQSIVQMGFG QNPNSETSLQ SQSFHGSNQA  540
PHMKAEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-94	bHLH family protein