PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50464.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HRT-like

Protein Properties

Length: 502aa MW: 55785.4 Da PI: 9.4314

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.8	1.6e-17	254	284	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dGs+C+r+P kgRKRC +HK Ri GAY50464.1 254 ICGVSLDDGSICRRPPLKGRKRCTQHKSLRI 284 8**************************9997 PP
2	HRT-like	58.1	1.5e-18	366	396	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv +dG++C+rqPvkgR RCeeHKGm+i GAY50464.1 366 ICGVESGDGTFCSRQPVKGRVRCEEHKGMKI 396 8****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MGAAETEIIR IKREECKRTK HDAHFSKWKI LVGASDWADY LLGKEGADRY RVHNLPSTSG 60 PGVYELGIVA SRSRTDRIDS DDVVVVYLGQ ADSVRTRLQC YGRSGAHLNN NPSNGSGCFD 120 DIFSRRHAIA YRRAPMENKA DALNTESELL STFDYAWNKG SNGTRRHYDV LRKLNTIASD 180 NIQFPQSIRK LLYFSQKPAG IKIKASKLPS KQNNCGTYAD EEGHSFFSQI FKFTKSQPRL 240 VLERHVTDED RTVICGVSLD DGSICRRPPL KGRKRCTQHK SLRISRSNPV KPPVIEEMCT 300 VSEEHKWRST NGSNSNILGA SEYVRNVDFD ANACNYSDSS EMSRSGRVQP QVFSKRFTTK 360 PNSDTICGVE SGDGTFCSRQ PVKGRVRCEE HKGMKIKGIK SKSAEEDKSN VYDAGSKLST 420 FNEEDFCSAV CGAQTLNGSY CRRPVKGNTN CWQHSKQSSN KGSTNSPCKG WSSGGTSICG 480 APTHNGSYCK RTVKGGGSCW QH

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MGAAETEIIR IKREECKRTK HDAHFSKWKI LVGASDWADY LLGKEGADRY RVHNLPSTSG  60
PGVYELGIVA SRSRTDRIDS DDVVVVYLGQ ADSVRTRLQC YGRSGAHLNN NPSNGSGCFD  120
DIFSRRHAIA YRRAPMENKA DALNTESELL STFDYAWNKG SNGTRRHYDV LRKLNTIASD  180
NIQFPQSIRK LLYFSQKPAG IKIKASKLPS KQNNCGTYAD EEGHSFFSQI FKFTKSQPRL  240
VLERHVTDED RTVICGVSLD DGSICRRPPL KGRKRCTQHK SLRISRSNPV KPPVIEEMCT  300
VSEEHKWRST NGSNSNILGA SEYVRNVDFD ANACNYSDSS EMSRSGRVQP QVFSKRFTTK  360
PNSDTICGVE SGDGTFCSRQ PVKGRVRCEE HKGMKIKGIK SKSAEEDKSN VYDAGSKLST  420
FNEEDFCSAV CGAQTLNGSY CRRPVKGNTN CWQHSKQSSN KGSTNSPCKG WSSGGTSICG  480
APTHNGSYCK RTVKGGGSCW QH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-86	HRT-like family protein