PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50303.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 522aa MW: 58435.3 Da PI: 7.2859

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.9	9.2e-17	158	207	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g GAY50303.1 158 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHAAARAYDRAAIKFRG 207 78*****************......44***********************98 PP
2	AP2	41.6	3.1e-13	250	300	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g GAY50303.1 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDRAAVKCNG 300 89******.7**5553..2.26******99*******988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MWDLNDSLKD IEESEACSSQ KTSIDGDDEK GKQVGSVSNS SSSAVVIENG SDEEIGASER 60 RLLSRSGGSK IFGVCLYQEA MEESEPEPPV TRQFFPVDFQ EQQATSSEAG ARGLAFPRAN 120 WVGVKFCQSE PIVEAGKSVI EAPQPLKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDSG 180 KQVYLGGFDT AHAAARAYDR AAIKFRGAEA DINFSIEDYE DDLKQMSNLT KEEFVHVLRR 240 QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEVEAARA YDRAAVKCNG 300 KDAVTNFDPS LYQDELKASG HGVDHNLDLS LGSSASNQQS SADFANRMQY TVMERPAPAS 360 LPNEVDWHNR GYRPKQQQEA YSRQHDLPYK RDGYSEAETM QLLSQTHLQS PASSSLNKSS 420 EMQRYEQFRR SGESHLLHMV PPQCNQSNYQ THQLTPGTGS SKRGRIGNEL SLSTNDHHQQ 480 WQSGPHMFAT AAASSGFPQQ IRSSHSQNWL QNNGFHSLVR PS

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MWDLNDSLKD IEESEACSSQ KTSIDGDDEK GKQVGSVSNS SSSAVVIENG SDEEIGASER  60
RLLSRSGGSK IFGVCLYQEA MEESEPEPPV TRQFFPVDFQ EQQATSSEAG ARGLAFPRAN  120
WVGVKFCQSE PIVEAGKSVI EAPQPLKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDSG  180
KQVYLGGFDT AHAAARAYDR AAIKFRGAEA DINFSIEDYE DDLKQMSNLT KEEFVHVLRR  240
QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEVEAARA YDRAAVKCNG  300
KDAVTNFDPS LYQDELKASG HGVDHNLDLS LGSSASNQQS SADFANRMQY TVMERPAPAS  360
LPNEVDWHNR GYRPKQQQEA YSRQHDLPYK RDGYSEAETM QLLSQTHLQS PASSSLNKSS  420
EMQRYEQFRR SGESHLLHMV PPQCNQSNYQ THQLTPGTGS SKRGRIGNEL SLSTNDHHQQ  480
WQSGPHMFAT AAASSGFPQQ IRSSHSQNWL QNNGFHSLVR PS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-116	AP2 family protein