PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50122.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRF

Protein Properties

Length: 600aa MW: 65188.4 Da PI: 7.4348

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50122.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.8	4.6e-24	232	276	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e GAY50122.1 232 DPEPGRCRRTDGKKWRCSRDAVTDQKYCERHINRGRHRSRKPVEG 276 79****************************************985 PP
2	QLQ	50.8	5e-18	164	200	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q +L++Q+l+yKy+++n+PvP++Ll +++k GAY50122.1 164 GPFTPSQRIELEHQALIYKYILSNAPVPSNLLIPLKK 200 59*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MDFGVLGLEG LSGLENGAPS QLSIYPETMP KAVGSSSRFV KKERSEPDEG DKPVSKMPKT 60 VDFSATKTLT LHQPTPLLRS NSLVSPDNNN TRNQHHEQML SFSSYKSQVP FLTTSTALME 120 RSSQQATSFP FYQHLPSSAH TRNTGYGYGS LNASMHGSFS GARGPFTPSQ RIELEHQALI 180 YKYILSNAPV PSNLLIPLKK SLHPFGLPYP ASYASNSYGW GTFHLGYSGN TDPEPGRCRR 240 TDGKKWRCSR DAVTDQKYCE RHINRGRHRS RKPVEGQTGH SNSKVVPTTS SVSTSVIANG 300 GAPNSLAISQ HELKNLQPVA ANPSADALVS RVQDSRSLSM MSSTINLKPN ESTFSFPKQD 360 FPWEESSQSV FGLVSSDSLL NPSQRSSYLN SKSYDESFLA FNDQETQDQN PLRQFIDDWP 420 KDESNRSVIT WPEELKSDWT QLSMSIPMAP PEFSSASSSP THERLVLSPL KLSRELDPMH 480 TGLGMNGDLG EPNQKQTNWI PISWGSSMGG PLGEALANTS KNVNACKNSA LNLLTEGWDG 540 SPQLGSSPTG VLQKSTFCSL SNSSSGSSPI AENKKAPDGA NLCDDVVGSA LASSSSIPSL

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MDFGVLGLEG LSGLENGAPS QLSIYPETMP KAVGSSSRFV KKERSEPDEG DKPVSKMPKT  60
VDFSATKTLT LHQPTPLLRS NSLVSPDNNN TRNQHHEQML SFSSYKSQVP FLTTSTALME  120
RSSQQATSFP FYQHLPSSAH TRNTGYGYGS LNASMHGSFS GARGPFTPSQ RIELEHQALI  180
YKYILSNAPV PSNLLIPLKK SLHPFGLPYP ASYASNSYGW GTFHLGYSGN TDPEPGRCRR  240
TDGKKWRCSR DAVTDQKYCE RHINRGRHRS RKPVEGQTGH SNSKVVPTTS SVSTSVIANG  300
GAPNSLAISQ HELKNLQPVA ANPSADALVS RVQDSRSLSM MSSTINLKPN ESTFSFPKQD  360
FPWEESSQSV FGLVSSDSLL NPSQRSSYLN SKSYDESFLA FNDQETQDQN PLRQFIDDWP  420
KDESNRSVIT WPEELKSDWT QLSMSIPMAP PEFSSASSSP THERLVLSPL KLSRELDPMH  480
TGLGMNGDLG EPNQKQTNWI PISWGSSMGG PLGEALANTS KNVNACKNSA LNLLTEGWDG  540
SPQLGSSPTG VLQKSTFCSL SNSSSGSSPI AENKKAPDGA NLCDDVVGSA LASSSSIPSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-116	GRF family protein