PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY49949.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

RAV

Protein Properties

Length: 332aa MW: 38149.8 Da PI: 8.6465

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY49949.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.9	7e-10	48	95	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV ++g W A+I+ + +r++lg+f ++ eAa a++ a+ k++g GAY49949.1 48 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEREAAMAYDSAAIKIRG 95 789996.566899**999......44******99**********998 PP
2	B3	83.6	1.8e-26	172	267	1	84
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ltpsdv+k++rlv+pkk+a ++ gg+ +++l++ d+ r W+++++++++s++yv+t+GW++Fvk+++Lke+D+++F+ GAY49949.1 172 FQKELTPSDVGKLNRLVIPKKYAVKYfpfisenagenainGGV--DDMELVFFDKLMRPWKFRYCFWRSSQSYVFTRGWNRFVKEKKLKEKDIITFYA 267 99*************************99998877776555..789**********************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MEEDASSMVS NAKTNANNTE ASDSNNSTSG LQPAPKRMRH DKNVSLVKFK GVVPQQNGHW 60 GAQIYANHQR IWLGTFKSER EAAMAYDSAA IKIRGGDSHR NFPWTDTNNQ EPNFQNQYST 120 EAVLNMIRDG TYQPKFADYL RVQSQREDNN SNASLNQIMV HGDEQFAYRQ LFQKELTPSD 180 VGKLNRLVIP KKYAVKYFPF ISENAGENAI NGGVDDMELV FFDKLMRPWK FRYCFWRSSQ 240 SYVFTRGWNR FVKEKKLKEK DIITFYACEC ANGAKEGQNF FLVDVIHCEG QNCNVVKKPV 300 QLEQITGKIF SYNEKESNSE EKGFKLFGVQ IN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-116	RAV family protein