PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY49824.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 369aa MW: 40218 Da PI: 5.5003

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY49824.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.9e-15	59	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++e d l ++v ++G ++W++Iar + gR++k+c++rw + GAY49824.1 59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 104 79****************************.*********985 PP
2	Myb_DNA-binding	56.3	7.6e-18	111	155	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd+++v a++ +G++ W+ I+r ++ gRt++ +k++w++ GAY49824.1 111 RKPFTDEEDQIIVAAHAVHGNK-WAVISRLLP-GRTDNAIKNHWNST 155 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MKMEPQTETE KWKATVIEVD GGDAVEADAD VGADRGRSGD DSVVAVGEGS KRSGRSRVKG 60 PWSPEQDAVL SELVSKFGAR NWSLIARGIA GRSGKSCRLR WCNQLDPAVK RKPFTDEEDQ 120 IIVAAHAVHG NKWAVISRLL PGRTDNAIKN HWNSTLRRRG VELRRTMKLG SVNMMEDMNV 180 DKTKASSEET LSCGDVNSFK FLEEKDTSSL ENLNNHCGDK STTEVPSSQE TEEPPTLFRP 240 LARVSAFSVY NTLDDPETAS IHPRQTPSQG PLVQVTMPDA GTCKLLEGVY GERMVPHWCG 300 YGCCGIQHGG NCQSSLLGPE FFDFSGPPAF PSYELAAIAT DISNVAWLKS GLENSSVTVM 360 GDEAGRIKN

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MKMEPQTETE KWKATVIEVD GGDAVEADAD VGADRGRSGD DSVVAVGEGS KRSGRSRVKG  60
PWSPEQDAVL SELVSKFGAR NWSLIARGIA GRSGKSCRLR WCNQLDPAVK RKPFTDEEDQ  120
IIVAAHAVHG NKWAVISRLL PGRTDNAIKN HWNSTLRRRG VELRRTMKLG SVNMMEDMNV  180
DKTKASSEET LSCGDVNSFK FLEEKDTSSL ENLNNHCGDK STTEVPSSQE TEEPPTLFRP  240
LARVSAFSVY NTLDDPETAS IHPRQTPSQG PLVQVTMPDA GTCKLLEGVY GERMVPHWCG  300
YGCCGIQHGG NCQSSLLGPE FFDFSGPPAF PSYELAAIAT DISNVAWLKS GLENSSVTVM  360
GDEAGRIKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-110	MYB family protein