PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY49564.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 1901aa MW: 207405 Da PI: 6.5801

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY49564.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.7	3e-09	943	984	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++vd + +G++ +++Ia+ ++ +t +c+++++k GAY49564.1 943 PWTSEEREIFVDKLATFGKD-FRKIASFLN-YKTTADCVEFYYK 984 8***************99.*****.9********98 PP
2	Myb_DNA-binding	35.7	2e-11	1159	1199	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av+ +G++ ++ Iar++ +R++ qck ++ GAY49564.1 1159 DWTDEEKSIFIQAVTSYGKD-FSMIARCIR-TRSRDQCKVFFS 1199 6***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1901 aa Download sequence
MPSELDRQAM TFTRFTGLNP SIRKNTPPAC NNSPNPRSGG ITVSSWLPSQ CLVTRIAEGL 60 ACSADAIRWN FNYMPPEPLP SDRKDFFKER KHHNNNSSHH QTDRSSSESL LGGGGNGGGG 120 SLHRWRDYSH HGREYPRFGS ADFRRPPGHG KQGGCHIFAE ESGHGYAPYR SSDKMPEDES 180 TRISVSRGDG KYGRNSRENR SSFCQSDCKG YAWDTSNGYA TTPGRLHEVN CNQRSVDDML 240 TYPSHPQSDF VTWDHLQLKD QHDNKIGSVN GLATGQRCES ENSLDWKKIK WTRSGSLSSR 300 GSGLSHSSSS KSMGGVDSSE GKTDFQVKNA TSIQSPSGDA ATYATSGVLF EETTSRKKPR 360 LGWGEGLAKY EKKKVEVPDV SGNKDGVFNF SSNAEPLQSL SSNLAEKSPR VMGFSDCASP 420 ATPSSVACSS SPGVEEKAFG KAVSVDNDVS NLCGSPSIVS QNHREGFLFN LEKLDTNSIG 480 NLGSSLVELL QYDDPSSVDS SFVRSTAMNK LLVWKGDILK TLEMTETEID SLENELKSLK 540 SVLGSTSPCP VTSISLSVED NANPFNKQGT VSNSIIRPAP LQIDCGDLSV ERMPDCGHGL 600 EEVHGNSKDE DIDSPGTATS KFVEPSSFVK PVSPSNMLKN GESFGVLDTV HSSNTEVKCT 660 MPGSSFGEVV AGASTCGDGD MILESKNDAL ISSNFSAYAD GENMLCDMIL GANKELANEA 720 SEVLKKLLPR DHSNIDISGV ANVFCCQNDS LVKEKFAKKK QLLRFKERVL TLKFKAFQHL 780 WREDLRLLSI RKYRARSQKK CELSLRTTYT GYQKHRSSIR SRFSSPAPKI KGVEHSAAAA 840 NRPVVWFSGM QLEMMKHVVG PFAILSAWML IFSGNLSLVQ TAEVINFTSK LLSDSQIKTY 900 RNSLKMPALI LDKKEKMSSR FISSNGLVED PCAVEKERAM INPWTSEERE IFVDKLATFG 960 KDFRKIASFL NYKTTADCVE FYYKNHKSDC FEKLKKKHDF SKQGKTLTNT YLVTSGKRNR 1020 KMNAASLDIL GEASEIAAAA QVDGRQLISS GRISSGGRGD SRTSLGDDGI IERSSSFDVI 1080 GGERETAAAD VLAGICGSLS SEAMSSCITS SVDPAEGQRD WRRQKADSVM RLPSTSDVTQ 1140 NVDDDTCSDE SCGEMDPSDW TDEEKSIFIQ AVTSYGKDFS MIARCIRTRS RDQCKVFFSK 1200 ARKCLGLDLI HTGRGNVGPS VNDDANGGGS DTEDACVLES SSVNCSDKLC SKTDEELPSH 1260 VIHSNQEESC SAGAKNLQTD LNKLEDDNGI TSLNDKDSEA VKPVKNDAFR TESRSFELES 1320 NNMNGMDNQS ESVLDQKNAV ELFKTAVRDK VAEQGALSVS AGEESDPCPS SSNAVEETND 1380 VVAEASTEGF GNGLERYQPM LLENSLNDVR DKICNVDACG ESEIVQDSNT TGSAFGLYVD 1440 ASSHSVSSKL DSVDKPPLIS LPQRNSHLAA ASTQNSSVIQ CKKVFIQDRM SSTLDLQRSK 1500 DKSDHKSVVS DDYRQHLSVH SIVNHIESPQ ILNGYPLPIS TKKEMNGDIN CRQLSEVQSI 1560 SKSDRNIDEP YLAQDCYLRK CNSSMPHSSV TELPFLAENI EQTSDRRRAH SCSFSDTEKP 1620 SKNGDVKLFG KILSHPSSSQ KSAFSSHDNG ENGHHHKQSS KASNLKFTAH HPPDGGAALL 1680 KFDRNNYVGL ENGPARSYGF WDGSKIQTGF SSLPDSAILL AKYPAAFGGY PASSSKMEQQ 1740 SLQAAVVKSN ERHLNGVAVV PPREISSSNG VVDYQVYRSR EGNKVQPFSV DMKQRQEFLF 1800 AEMQRRNGFE ALSSIQQQGK GMVGVNVVGR GGILVGGGSC TGVSDPVAAI RMHYAKAEQY 1860 GGQGGSIIRE EESWRGKGDI GRNNLGKLGE AIPGFSLQQP I

Sequence ? help Back to Top

Protein Sequence Length: 1901 aa Download sequence

MPSELDRQAM TFTRFTGLNP SIRKNTPPAC NNSPNPRSGG ITVSSWLPSQ CLVTRIAEGL  60
ACSADAIRWN FNYMPPEPLP SDRKDFFKER KHHNNNSSHH QTDRSSSESL LGGGGNGGGG  120
SLHRWRDYSH HGREYPRFGS ADFRRPPGHG KQGGCHIFAE ESGHGYAPYR SSDKMPEDES  180
TRISVSRGDG KYGRNSRENR SSFCQSDCKG YAWDTSNGYA TTPGRLHEVN CNQRSVDDML  240
TYPSHPQSDF VTWDHLQLKD QHDNKIGSVN GLATGQRCES ENSLDWKKIK WTRSGSLSSR  300
GSGLSHSSSS KSMGGVDSSE GKTDFQVKNA TSIQSPSGDA ATYATSGVLF EETTSRKKPR  360
LGWGEGLAKY EKKKVEVPDV SGNKDGVFNF SSNAEPLQSL SSNLAEKSPR VMGFSDCASP  420
ATPSSVACSS SPGVEEKAFG KAVSVDNDVS NLCGSPSIVS QNHREGFLFN LEKLDTNSIG  480
NLGSSLVELL QYDDPSSVDS SFVRSTAMNK LLVWKGDILK TLEMTETEID SLENELKSLK  540
SVLGSTSPCP VTSISLSVED NANPFNKQGT VSNSIIRPAP LQIDCGDLSV ERMPDCGHGL  600
EEVHGNSKDE DIDSPGTATS KFVEPSSFVK PVSPSNMLKN GESFGVLDTV HSSNTEVKCT  660
MPGSSFGEVV AGASTCGDGD MILESKNDAL ISSNFSAYAD GENMLCDMIL GANKELANEA  720
SEVLKKLLPR DHSNIDISGV ANVFCCQNDS LVKEKFAKKK QLLRFKERVL TLKFKAFQHL  780
WREDLRLLSI RKYRARSQKK CELSLRTTYT GYQKHRSSIR SRFSSPAPKI KGVEHSAAAA  840
NRPVVWFSGM QLEMMKHVVG PFAILSAWML IFSGNLSLVQ TAEVINFTSK LLSDSQIKTY  900
RNSLKMPALI LDKKEKMSSR FISSNGLVED PCAVEKERAM INPWTSEERE IFVDKLATFG  960
KDFRKIASFL NYKTTADCVE FYYKNHKSDC FEKLKKKHDF SKQGKTLTNT YLVTSGKRNR  1020
KMNAASLDIL GEASEIAAAA QVDGRQLISS GRISSGGRGD SRTSLGDDGI IERSSSFDVI  1080
GGERETAAAD VLAGICGSLS SEAMSSCITS SVDPAEGQRD WRRQKADSVM RLPSTSDVTQ  1140
NVDDDTCSDE SCGEMDPSDW TDEEKSIFIQ AVTSYGKDFS MIARCIRTRS RDQCKVFFSK  1200
ARKCLGLDLI HTGRGNVGPS VNDDANGGGS DTEDACVLES SSVNCSDKLC SKTDEELPSH  1260
VIHSNQEESC SAGAKNLQTD LNKLEDDNGI TSLNDKDSEA VKPVKNDAFR TESRSFELES  1320
NNMNGMDNQS ESVLDQKNAV ELFKTAVRDK VAEQGALSVS AGEESDPCPS SSNAVEETND  1380
VVAEASTEGF GNGLERYQPM LLENSLNDVR DKICNVDACG ESEIVQDSNT TGSAFGLYVD  1440
ASSHSVSSKL DSVDKPPLIS LPQRNSHLAA ASTQNSSVIQ CKKVFIQDRM SSTLDLQRSK  1500
DKSDHKSVVS DDYRQHLSVH SIVNHIESPQ ILNGYPLPIS TKKEMNGDIN CRQLSEVQSI  1560
SKSDRNIDEP YLAQDCYLRK CNSSMPHSSV TELPFLAENI EQTSDRRRAH SCSFSDTEKP  1620
SKNGDVKLFG KILSHPSSSQ KSAFSSHDNG ENGHHHKQSS KASNLKFTAH HPPDGGAALL  1680
KFDRNNYVGL ENGPARSYGF WDGSKIQTGF SSLPDSAILL AKYPAAFGGY PASSSKMEQQ  1740
SLQAAVVKSN ERHLNGVAVV PPREISSSNG VVDYQVYRSR EGNKVQPFSV DMKQRQEFLF  1800
AEMQRRNGFE ALSSIQQQGK GMVGVNVVGR GGILVGGGSC TGVSDPVAAI RMHYAKAEQY  1860
GGQGGSIIRE EESWRGKGDI GRNNLGKLGE AIPGFSLQQP I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein