PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY49254.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 920aa MW: 102745 Da PI: 6.2536

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY49254.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.7	1.3e-29	603	652	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yFs+++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ GAY49254.1 603 KTITLQVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 652 89**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence
MEDTVFLPGT MRGASLDSAM DLDYMNELLA EGCWLETIDG SEFPHPSPST STALFDSSFV 60 WPASEITNGD TSRNPSQQGN QDDMQQSFFL QTSSMNDPQQ NGPLSTPSLS QGMVNVDEDD 120 GQLDDNITEG SELSKRRWIG PRANPGPATS IIQRLGWAVG YIKDFSINKD VLIQLWVPVI 180 RAGRQVLTTY DQPFSLDLKC QRLANYRAIS IKYYFSAEED SKDVAGLPGR VFLGKAPEWT 240 PDVQFFRSDE YPRVDHAQQY DVRGTLAVPV FEQGSRTCLG VIEVVMMTQK LKYRSELESV 300 CKALEAWNTS YQAALPEIRE VLRCACETHR LPLAQTWVSC IQQGKVGCWH SDKNNNHCVS 360 TVDDACYIAD PDMWGFQEAC SEHHLLKGQR VAGEAFLTNQ PCFSNDITSL KKTEYPLSHH 420 ARMFGLCGAV AIRLRSILTG NSDFVLEFFL PKGCRDPEEQ KKMLSSLSII IQQVSRSLRV 480 VTDKEMEEET SLPVSEVIFP SDGRPSREKI LKVDSHSEKY SHDNSSQSAC LTKVQRDCDV 540 SLNQNGKPRK VSGKRFLEGG HRKEDFSLKG SAEYCDDSNS VEGSFSSVAL GKTGEKRRTK 600 VDKTITLQVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG IKRWPSRKIK KVGHSLQKLQ 660 LVIDSVQGAS GSFQIGSFYT NFPELASPNL SRSGASPFSN SLPTDQQKLT GMQAKGGTLS 720 PQAQAAKSPS SSCSQSSNSS QCCTSGTQQH RSTNNIAGSE DPVVGESFDD VVLKRVRSYE 780 ELHASSQEPR LLPRSQSYKS FREQPIPRLP ENGCRMSQEV VDGRRLKVTY GEEKIRLRMQ 840 DNWKFQDLLQ EIARRFNIDD MSLFDVKYLD DDSDWVLLTC DADLEECIEV CRSSEGQTIK 900 LLLQVSHHLF ERRSGSSGNS

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence

MEDTVFLPGT MRGASLDSAM DLDYMNELLA EGCWLETIDG SEFPHPSPST STALFDSSFV  60
WPASEITNGD TSRNPSQQGN QDDMQQSFFL QTSSMNDPQQ NGPLSTPSLS QGMVNVDEDD  120
GQLDDNITEG SELSKRRWIG PRANPGPATS IIQRLGWAVG YIKDFSINKD VLIQLWVPVI  180
RAGRQVLTTY DQPFSLDLKC QRLANYRAIS IKYYFSAEED SKDVAGLPGR VFLGKAPEWT  240
PDVQFFRSDE YPRVDHAQQY DVRGTLAVPV FEQGSRTCLG VIEVVMMTQK LKYRSELESV  300
CKALEAWNTS YQAALPEIRE VLRCACETHR LPLAQTWVSC IQQGKVGCWH SDKNNNHCVS  360
TVDDACYIAD PDMWGFQEAC SEHHLLKGQR VAGEAFLTNQ PCFSNDITSL KKTEYPLSHH  420
ARMFGLCGAV AIRLRSILTG NSDFVLEFFL PKGCRDPEEQ KKMLSSLSII IQQVSRSLRV  480
VTDKEMEEET SLPVSEVIFP SDGRPSREKI LKVDSHSEKY SHDNSSQSAC LTKVQRDCDV  540
SLNQNGKPRK VSGKRFLEGG HRKEDFSLKG SAEYCDDSNS VEGSFSSVAL GKTGEKRRTK  600
VDKTITLQVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG IKRWPSRKIK KVGHSLQKLQ  660
LVIDSVQGAS GSFQIGSFYT NFPELASPNL SRSGASPFSN SLPTDQQKLT GMQAKGGTLS  720
PQAQAAKSPS SSCSQSSNSS QCCTSGTQQH RSTNNIAGSE DPVVGESFDD VVLKRVRSYE  780
ELHASSQEPR LLPRSQSYKS FREQPIPRLP ENGCRMSQEV VDGRRLKVTY GEEKIRLRMQ  840
DNWKFQDLLQ EIARRFNIDD MSLFDVKYLD DDSDWVLLTC DADLEECIEV CRSSEGQTIK  900
LLLQVSHHLF ERRSGSSGNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein