PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY49177.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 317aa    MW: 35782.9 Da    PI: 4.9895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY49177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13124175155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  GAY49177.1 124 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YVQRGDQASIIGGAINFVKELE 175
                 79****************************...9******************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MALEAVVYQQ DFLSYNGSKD INNLLGCPFD DHHFLENQTE SFLDGDYWNN NSTSSSPPAP  60
TPSIMVPNFN EFYSEDANAN VNANVSSILD ADHPLHQMDI TLPNNRPKRR RAKSRKNQEE  120
IENQRMTHIA VERNRRKQMN EYLSVLRSLM PDSYVQRGDQ ASIIGGAINF VKELEQRLQS  180
LGARKEIKEN SESGSTLFAE FFAFPQYSTS SSRSESEAIM SNETQNSIAD IEVNMVESHA  240
NLKIRSKRRP KQLLKLVSGL QSMRLTLLHL NVTTADEIVL YSLSVKVEDD CNLTSGDDIA  300
TAVYQLLGRI QEDASLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125136RMTHIAVERNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-83bHLH family protein