PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48660.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HB-PHD

Protein Properties

Length: 1063aa MW: 117065 Da PI: 4.8891

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.4	5.1e-13	891	938	5	52
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++ +e ++ L + F++n+yp+++++e LAk+lgLt +qV+ WF N R GAY48660.1 891 RKIGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTR 938 3445799***************************************99 PP
2	PHD	39.7	1.1e-13	526	581	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH++Cl+++l +e++p + wlC+ C++k GAY48660.1 526 YCAKCGSkdLSADNDIILCDGaCDRGFHQYCLEPPLLKEDIPPDdeGWLCPGCDCK 581 7****77677****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1063 aa Download sequence
MSKAEHMGVS PSQVTSSTRD HSCLKQTTPE QMCKFCAECI HSEPLESKSL LGSEAVENEP 60 RETSIPNSEK LQAFCGDVPD SSFTDHLAPP SEDMRKSTQT NKASCSQQNT SEQKHGTELM 120 HNEQSEQKHQ LCYQIVFDKP QATSLVDNAT LQPVSKDVSK SSQTGTRQAL DFLSGNRCNE 180 LDVDCVHSEP LDQKHQLGSE IIQNEPAVNV ARLPSDGVEE NLQTISEDLT KVCPVEPSQS 240 PPRDANNSCQ AGEISYLQQS SSEQTPEFTP GISSHEPSVV NYKLGSQLEQ TELGETSAGE 300 LGASLELVVK SSIEQLKQPE VPITIPSTKT SATKHLQSSS DLMEKKSCLE QSETPPNYVA 360 NNSACLGCKG KRATKSLKNN YTVRSLIGSD RVLRSRSGER PIPPESSNNL ADVNSIGERK 420 QKKRNKIRRK KTVADEYSRI RTHLRYLLNR INYEQNLIDA YSSEGWKGLS VEKLKPEKEL 480 QRATSEILRR KLKIRDLFQR LDSLCAGGFP KSLFDSEGQI DSEDIYCAKC GSKDLSADND 540 IILCDGACDR GFHQYCLEPP LLKEDIPPDD EGWLCPGCDC KVDCIDLVNE LQGTRLFITD 600 NWEKVFPEAA AGHNQDPNFG LASDDSDDNE YDPDGSATDE QDEGDESSSD GSSSDDSDFT 660 STSDEVEAPA DDKTYLGRSS EDSEDDEYNP DAPDLDDKVT QESSSSGSDF TSDSEDLAAV 720 LEDNRSSGND EGATSPLGHS NGQRYKDGGN NESLNNELLS IIKPGQDGAA PVYGKRSSER 780 LDYKKLYDET YGNVPYDSSD DESWSDDGGP RKRTKSTKEG TSASPDGKTP VIRRRKSTKA 840 AKEKLNETEN TPKRRGRPKL NTEDSNISPA KSHEGCSTPG SRGRRHRTSY RKIGEEVTQK 900 LYNSFKENQY PNRTTKESLA KELGLTFSQV RKWFENTRWS FNHPSSKNAK LANSEKGTCT 960 PQSNKNTVGR VSNCNGAENV QSSKTGVDDT GCMTGDVKNN TQECNSIKPT SQTSRKRDRD 1020 GKSGDQASDP SSKMEVIQGL SANSPKVEVQ ANGRTRRRRN SAV

Sequence ? help Back to Top

Protein Sequence Length: 1063 aa Download sequence

MSKAEHMGVS PSQVTSSTRD HSCLKQTTPE QMCKFCAECI HSEPLESKSL LGSEAVENEP  60
RETSIPNSEK LQAFCGDVPD SSFTDHLAPP SEDMRKSTQT NKASCSQQNT SEQKHGTELM  120
HNEQSEQKHQ LCYQIVFDKP QATSLVDNAT LQPVSKDVSK SSQTGTRQAL DFLSGNRCNE  180
LDVDCVHSEP LDQKHQLGSE IIQNEPAVNV ARLPSDGVEE NLQTISEDLT KVCPVEPSQS  240
PPRDANNSCQ AGEISYLQQS SSEQTPEFTP GISSHEPSVV NYKLGSQLEQ TELGETSAGE  300
LGASLELVVK SSIEQLKQPE VPITIPSTKT SATKHLQSSS DLMEKKSCLE QSETPPNYVA  360
NNSACLGCKG KRATKSLKNN YTVRSLIGSD RVLRSRSGER PIPPESSNNL ADVNSIGERK  420
QKKRNKIRRK KTVADEYSRI RTHLRYLLNR INYEQNLIDA YSSEGWKGLS VEKLKPEKEL  480
QRATSEILRR KLKIRDLFQR LDSLCAGGFP KSLFDSEGQI DSEDIYCAKC GSKDLSADND  540
IILCDGACDR GFHQYCLEPP LLKEDIPPDD EGWLCPGCDC KVDCIDLVNE LQGTRLFITD  600
NWEKVFPEAA AGHNQDPNFG LASDDSDDNE YDPDGSATDE QDEGDESSSD GSSSDDSDFT  660
STSDEVEAPA DDKTYLGRSS EDSEDDEYNP DAPDLDDKVT QESSSSGSDF TSDSEDLAAV  720
LEDNRSSGND EGATSPLGHS NGQRYKDGGN NESLNNELLS IIKPGQDGAA PVYGKRSSER  780
LDYKKLYDET YGNVPYDSSD DESWSDDGGP RKRTKSTKEG TSASPDGKTP VIRRRKSTKA  840
AKEKLNETEN TPKRRGRPKL NTEDSNISPA KSHEGCSTPG SRGRRHRTSY RKIGEEVTQK  900
LYNSFKENQY PNRTTKESLA KELGLTFSQV RKWFENTRWS FNHPSSKNAK LANSEKGTCT  960
PQSNKNTVGR VSNCNGAENV QSSKTGVDDT GCMTGDVKNN TQECNSIKPT SQTSRKRDRD  1020
GKSGDQASDP SSKMEVIQGL SANSPKVEVQ ANGRTRRRRN SAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	420	431	KQKKRNKIRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-95	HB-PHD family protein