PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY48097.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 349aa    MW: 39464.4 Da    PI: 4.3989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY48097.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21e-11184227654
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  GAY48097.1 184 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILADTIDYMKEL 227
                 589*********************66......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MEFSEHGFLE ELLALRRDAY TWDTSIPAEM NQIFSDGNWI YDCFDENPAA FSPNSFSAPI  60
HQQDNFNYNN FFNEAAYCPY GDDQLSAPQL TDSSSMNTLD SHTHTPPSFP IQEEAPLSMM  120
ELDGEEPNNL LADEFQNLEM LQNCFKVEPV HESPETLPVF NMGTDCLERK SRNKKLGGQP  180
SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILADT IDYMKELLDK ISSLQQEIQA  240
GSNNLETGIF KDVKPNEIVV RNSPKFDVER TNMDTRVEIC CAGKPGLLLS TVTSLEALGL  300
EIQQCVISCF NDFAMQASCS EGVEQRETLS CEDIKQALFR NAGYGGKCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187194ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-83bHLH family protein