PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47525.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CO-like

Protein Properties

Length: 461aa MW: 51469.8 Da PI: 5.2381

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47525.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.9	1.2e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C ++ +lC+ C + H+ H++v GAY47525.1 16 ARACDNCIKKRARWYCAADDAFLCQACDASVHSAnplarrHERV 59 578*****************************657888888876 PP
2	CCT	67.9	2.7e-23	402	445	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a GAY47525.1 402 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 445 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MSSNKNVANA VGGKTARACD NCIKKRARWY CAADDAFLCQ ACDASVHSAN PLARRHERVR 60 LKTASNKSSG SESLSDNTHV PSWHRGFTRK ARTPRKTGKP IRNVTLPLVP EVGADELSHE 120 ENEEDQLLYN CRVPTYDPFV AELCTSTANS NEAAENNNAT AKTDAHDDES TADDAVNGSE 180 SKPVRACYNG DVDSLHGFLP SDMDLAEFAA DVESMLGRGL VNESFAMEEL GLVDFREKDF 240 TVKVEQQEGA VEAEGARDIE ECKVFDNNNN YNNHDQIDLE REPFELNFDY DSPATCGDED 300 EKIVKEEMET SGEGCHEDDD EAKKNNKKKR KILLSLDYES VIKSWASQGS PWTNGDRPNF 360 DPEECWPDCM GTCGTEGHKY LQHPYGDFSG IGAHPATVDG GREARVSRYR EKRRTRLFSK 420 KIRYEVRKLN AEKRPRMKGR FVKRASFAGG PPAFPLFGKT N

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MSSNKNVANA VGGKTARACD NCIKKRARWY CAADDAFLCQ ACDASVHSAN PLARRHERVR  60
LKTASNKSSG SESLSDNTHV PSWHRGFTRK ARTPRKTGKP IRNVTLPLVP EVGADELSHE  120
ENEEDQLLYN CRVPTYDPFV AELCTSTANS NEAAENNNAT AKTDAHDDES TADDAVNGSE  180
SKPVRACYNG DVDSLHGFLP SDMDLAEFAA DVESMLGRGL VNESFAMEEL GLVDFREKDF  240
TVKVEQQEGA VEAEGARDIE ECKVFDNNNN YNNHDQIDLE REPFELNFDY DSPATCGDED  300
EKIVKEEMET SGEGCHEDDD EAKKNNKKKR KILLSLDYES VIKSWASQGS PWTNGDRPNF  360
DPEECWPDCM GTCGTEGHKY LQHPYGDFSG IGAHPATVDG GREARVSRYR EKRRTRLFSK  420
KIRYEVRKLN AEKRPRMKGR FVKRASFAGG PPAFPLFGKT N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	413	429	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-106	CO-like family protein