PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47324.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 195aa MW: 21124.8 Da PI: 7.8363

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.9	1e-44	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++C++apyfp e+p+kf nvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+++++ GAY47324.1 11 PCAACKFLRRKCVPGCIFAPYFPPEEPQKFVNVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANA 109 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MASSSNSYNS PCAACKFLRR KCVPGCIFAP YFPPEEPQKF VNVHKIFGAS NVTKLLNDLL 60 PHQREDAVNS LAYEAEARVR DPVYGCVGAI SFLQRQVHRL QKELDSANAD LIRYACNEIP 120 PGSQLPAPAP LSVSSIHPVI PRQRPIRIGN EGEGFYQPPS AYTHPSYILP WNDNPSPSGD 180 INHGGGGGGG GQGNM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	3e-77	LBD family protein