PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47179.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 338aa MW: 37887 Da PI: 7.3272

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	174	193	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ GAY47179.1 174 FSCPLCFKTFNRYNNMQMHM 193 89*****************9 PP
2	zf-C2H2	12.5	0.00044	258	280	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ GAY47179.1 258 FMCRKCSKAFAVRGDWRTHEKNC 280 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MADPYSNYFN GWLNFAALQH SSSSNNSSSN YYTPFAFNIY SSNNNNNNFC THYHQYSSPP 60 SPPLKEALPL LSLSPARHDG IVKADESSCS VMDTEESSAA YCDDHHESAS LTVSLHLGLA 120 ESSSADLISD YNNDNNNKEE VVTIASGRGG GCSLNKGQYW IPTPAQILIG PTQFSCPLCF 180 KTFNRYNNMQ MHMWGHGSQY RKGPESLRGS QPTAMLRLPC YCCAPGCRNN IDHPRSKPLK 240 DFRTLQTHYK RKHGIKPFMC RKCSKAFAVR GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD 300 HIKAFGNGHA SCGIDTFEDD EPASEIEQDN NESSRDID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-131	C2H2 family protein