PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47053.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 365aa MW: 40772.7 Da PI: 6.9632

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.3e-14	176	222	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L GAY47053.1 176 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 222 79***********************9.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MCGLKEEDQG QCSQTIHNLQ SYQEQLFLHH QQQQQQQQMH QQQLQQHHHH HHQQQQRGGL 60 IIPEVSPILP WSLTQVHSFN PAHFGPNPVR EHDPFVLPPP PPPPPTTSYG SLINRSRAPA 120 LQFAYDGSST HDHLRIISDT LGPMVQPGSA PFGLQAELNK MTAQEIMDAK ALAASKSHSE 180 AERRRRERIN NHLAKLRSLL PSTTKTDKAS LLAEVIQHVK ELKRQTSLIA ETSPVPTEMD 240 ELTVDASDED GKFVIKASLC CEDRSDLLPD LIKSLKALRL RTLKAEITTL GGRAKNVLFI 300 TADDQDSSCS SAAGEQHQQQ QQQYSISSIE EALKAVMEKT SGDESSSGSV KRQRTNINNL 360 EHRSL

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MCGLKEEDQG QCSQTIHNLQ SYQEQLFLHH QQQQQQQQMH QQQLQQHHHH HHQQQQRGGL  60
IIPEVSPILP WSLTQVHSFN PAHFGPNPVR EHDPFVLPPP PPPPPTTSYG SLINRSRAPA  120
LQFAYDGSST HDHLRIISDT LGPMVQPGSA PFGLQAELNK MTAQEIMDAK ALAASKSHSE  180
AERRRRERIN NHLAKLRSLL PSTTKTDKAS LLAEVIQHVK ELKRQTSLIA ETSPVPTEMD  240
ELTVDASDED GKFVIKASLC CEDRSDLLPD LIKSLKALRL RTLKAEITTL GGRAKNVLFI  300
TADDQDSSCS SAAGEQHQQQ QQQYSISSIE EALKAVMEKT SGDESSSGSV KRQRTNINNL  360
EHRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	187	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-100	bHLH family protein