PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47050.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 378aa MW: 42097.1 Da PI: 5.9066

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.5	6.8e-33	58	197	1	128
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWka 85 lp+G++F+P+d+e++++ L+k +eg + + +e+i++vd i++++P++Lp vk++ + +fF ++ k+y+tg+rk+r+++ + +W++ GAY47050.1 58 LPRGVKFDPSDQEIIWHLLAKAgLEGLNphpfI--DEFIPTVDqdggICYTHPQNLP-GVKQDGSAAHFFYRAIKAYSTGTRKRRKINgddfgEVRWHK 153 799**********998888745554464322..345777765677******.777888999**************86555655889* PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tg++k+v+ +g ++g+kk++v+y r k+ekt+Wvmh+y+l GAY47050.1 154 TGRTKPVML-DGVQKGCKKIMVLYmsMVRGGKPEKTNWVMHQYHL 197 *******.99********6545788888*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MAGPSWLVDS NRIATKIKSA SGTGDPERVK WKSNPTKACP NCHHVIDNSD VAHEWPGLPR 60 GVKFDPSDQE IIWHLLAKAG LEGLNPHPFI DEFIPTVDQD GGICYTHPQN LPGVKQDGSA 120 AHFFYRAIKA YSTGTRKRRK INGDDFGEVR WHKTGRTKPV MLDGVQKGCK KIMVLYMSMV 180 RGGKPEKTNW VMHQYHLGTE EDEKDDNYVI SKIFYQQQQA KYGDKIEQDI LESTGAIIPK 240 VDPVTPKSVT PDPPRTERHP DFGPRQESPT TDAFDQNGLS QNILDTQQLA EALTLCEEFL 300 NSQSDGNAND GTSKGKPGLS DYARLGSEHL KKDLEECQML VHDPANIELD TPPEFGLSQL 360 EFNSQDSFIP FGGSKAIN

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MAGPSWLVDS NRIATKIKSA SGTGDPERVK WKSNPTKACP NCHHVIDNSD VAHEWPGLPR  60
GVKFDPSDQE IIWHLLAKAG LEGLNPHPFI DEFIPTVDQD GGICYTHPQN LPGVKQDGSA  120
AHFFYRAIKA YSTGTRKRRK INGDDFGEVR WHKTGRTKPV MLDGVQKGCK KIMVLYMSMV  180
RGGKPEKTNW VMHQYHLGTE EDEKDDNYVI SKIFYQQQQA KYGDKIEQDI LESTGAIIPK  240
VDPVTPKSVT PDPPRTERHP DFGPRQESPT TDAFDQNGLS QNILDTQQLA EALTLCEEFL  300
NSQSDGNAND GTSKGKPGLS DYARLGSEHL KKDLEECQML VHDPANIELD TPPEFGLSQL  360
EFNSQDSFIP FGGSKAIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-138	NAC family protein