PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47044.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

RAV

Protein Properties

Length: 372aa MW: 41237.5 Da PI: 9.0748

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47044.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46	1.3e-14	64	112	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAaka++ a+++++g GAY47044.1 64 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAKAYDIAAQRFRG 112 89**9888.8*****3.....5***********************98 PP
2	B3	101.7	4.3e-32	202	301	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+ tpsdv+k++rlv+pk++ae+h +g++ ++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ +++l++ GAY47044.1 202 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYID 300 89**************************77888999***********************************************876677777776 PP E CS B3 96 v 96 + GAY47044.1 301 W 301 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MDGSCMDEST TTDSASTSPP ITFPPSIPPT KSPESLCRVG SGASSVILDS EAGVEAESRK 60 LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEEAA KAYDIAAQRF RGRDAVTNFK 120 QMSCAGTSSD EGDIEMAFLS SHSKSEIVDM LRKHTYNDEL EQSKRNYGLD ANGKRVIKHG 180 EGDGVATAFG SDRVLKARDQ LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QSGSTSKGLL 240 LNFEDVTGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDIVSFHRS TGGDRQLYID 300 WKARTGPVEN PVEPVQMMRL FGVNIFKIPG NGLVGVDKIG CNINNNNDGK RLREMELLSL 360 ECSKKQRMIG AS

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MDGSCMDEST TTDSASTSPP ITFPPSIPPT KSPESLCRVG SGASSVILDS EAGVEAESRK  60
LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEEAA KAYDIAAQRF RGRDAVTNFK  120
QMSCAGTSSD EGDIEMAFLS SHSKSEIVDM LRKHTYNDEL EQSKRNYGLD ANGKRVIKHG  180
EGDGVATAFG SDRVLKARDQ LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QSGSTSKGLL  240
LNFEDVTGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDIVSFHRS TGGDRQLYID  300
WKARTGPVEN PVEPVQMMRL FGVNIFKIPG NGLVGVDKIG CNINNNNDGK RLREMELLSL  360
ECSKKQRMIG AS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-153	RAV family protein