PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY46963.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 341aa    MW: 36323.4 Da    PI: 7.8201
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY46963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-101155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+e d+ + +a   ++ +   +W++Ia+ ++ g++l+++k ++ 
       GAY46963.1 11 VWTKEQDKAFENALVSYPEDasdRWEKIAADVP-GKSLEEIKQHYE 55
                     7********************************.**********95 PP
2Myb_DNA-binding24.27.8e-081762111247
                      HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
       GAY46963.1 176 FLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 211
                      6667889****************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MTVDEVGSSS VWTKEQDKAF ENALVSYPED ASDRWEKIAA DVPGKSLEEI KQHYELLVDD  60
VNRIESGCVP LPSYNSSSDG SMSHAGDEGT SNGKKGGHYG HFNSESNGNK SSRSDQERRK  120
GIAWTEDEHR NKGFASWVVL HGILNRGTIA CSKPIEFSAF EELVSPASSA LVGWLFLLGL  180
DKYGKGDWRS ISRNFVVTRT PTQVASHAQK YFIRLNSMNK DRRRSSIHDI TSVNNGDISA  240
PQGPITGQTN GSGGGGSSGK SSKQPPQHSA GPPGVGMYGA PTMGQPIGGP LVSAVGTPVN  300
LPAPAHMAYG VRATVPGTVV PGAPMNVSPM PYPMPHASAH R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-123MYB family protein