PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY46015.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 585aa MW: 66382.2 Da PI: 5.2733

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY46015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.4e-12	337	380	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ Lr l+P +Kl+ a+iL A+eY+k+Lq GAY46015.1 337 VAERKRRKKLNDRLYALRALVPII-----TKLDRATILVDAIEYVKQLQ 380 68*******************7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
VINMTVVQTL MDRLRPLVGL KGWDYCVLWK LSDDQRFIAW IDCCCAGIEG IQNDDGDELH 60 FPVSPFLPCR DVIFPHPRTK SCELLSQLPS SMPLDSGIYA QSLISNQPRW INFSNSADLE 120 VMEETLWTRV LIPIMGGLIE LFATKEVSED PHVIDFIIAQ CNISMEQDPM NMNTSCYLDN 180 ASSSVNVHAM ALENSDVPYD LSVDRIRICS GCTSPVNFLQ QFGYSSSSKN VKRHRNDMFF 240 EGSRDDSTHQ NGIQEMDNAS NMNIQFMEPN MGNKELQQGN YDDLNKDLIK PDQNNNNNNN 300 GRSDSISDCS DQIDDLEDDV KYRPRRNGKE PQSKNLVAER KRRKKLNDRL YALRALVPII 360 TKLDRATILV DAIEYVKQLQ KQEKELKEEL EENSDDDGAA KNDDMGISVN NHNAVKPESL 420 TQNGTNFGPK TEPNQCHMGN GRKQDQDSGN TIDKGQQMEV QVEVAQLNGN EFFIKVFCEH 480 KPGGFVRLMQ ALNSLGLEVT NANVTSRTGL VSNVFNVKKR DNEMVQADHV RDSLLELTRN 540 PAREWIENVA KASDSTVNNG INYHHHEQHL HSHHMSTHHH HLHHN

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

VINMTVVQTL MDRLRPLVGL KGWDYCVLWK LSDDQRFIAW IDCCCAGIEG IQNDDGDELH  60
FPVSPFLPCR DVIFPHPRTK SCELLSQLPS SMPLDSGIYA QSLISNQPRW INFSNSADLE  120
VMEETLWTRV LIPIMGGLIE LFATKEVSED PHVIDFIIAQ CNISMEQDPM NMNTSCYLDN  180
ASSSVNVHAM ALENSDVPYD LSVDRIRICS GCTSPVNFLQ QFGYSSSSKN VKRHRNDMFF  240
EGSRDDSTHQ NGIQEMDNAS NMNIQFMEPN MGNKELQQGN YDDLNKDLIK PDQNNNNNNN  300
GRSDSISDCS DQIDDLEDDV KYRPRRNGKE PQSKNLVAER KRRKKLNDRL YALRALVPII  360
TKLDRATILV DAIEYVKQLQ KQEKELKEEL EENSDDDGAA KNDDMGISVN NHNAVKPESL  420
TQNGTNFGPK TEPNQCHMGN GRKQDQDSGN TIDKGQQMEV QVEVAQLNGN EFFIKVFCEH  480
KPGGFVRLMQ ALNSLGLEVT NANVTSRTGL VSNVFNVKKR DNEMVQADHV RDSLLELTRN  540
PAREWIENVA KASDSTVNNG INYHHHEQHL HSHHMSTHHH HLHHN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	339	346	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-131	bHLH family protein