PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY45729.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 613aa MW: 68230.6 Da PI: 6.4646

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY45729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5.1e-13	444	490	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq GAY45729.1 444 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 490 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MKIEFNMGGN LWNDEDKAMG AAVLGTRAFD YLLTSSISNE NLLMAVGSDE DLQNKLSDLV 60 DRPNASNFSW NYAIFWQISR SKSGDWVLGW GDGSCREPKE GEESEATRIP NIRLEDETQQ 120 RMRKRVLQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPRGEGG PGKCFASGKH 180 VWLLDALKLS SDYCVRSFLA KSARIQTIVL ISTDAGVVEL GSVRSVPESL ELVHSIRATF 240 SSNSSLARVK PMAVALPVTS EKKDENGLFP NLGILDRVEG VPKIFGQELN NSGHVHTHFS 300 REKLAVRKME ERPSWEAYTN GNRTAFPGIR NGVHGFSWGN VQGVKQGIAT EIFGSQTNNL 360 QELVNGVRED FRINHYQSQK PMQMQIDFSG ATSRPNVIAR PLNADSEHSD VEASCRDERT 420 GTVEERRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG 480 DAIAYINELQ AKLKVMEAER ENLSGNSRDL SAFESNPNVE SQNRAPDVDI QAAHDEVVVR 540 VSCPLDSHPA SRVIQAFKDA QITVVESKLS TGNDMVFHTF VIKSQGSEQL TKEKLIAAFS 600 CESSSIQPLS SVG

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MKIEFNMGGN LWNDEDKAMG AAVLGTRAFD YLLTSSISNE NLLMAVGSDE DLQNKLSDLV  60
DRPNASNFSW NYAIFWQISR SKSGDWVLGW GDGSCREPKE GEESEATRIP NIRLEDETQQ  120
RMRKRVLQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPRGEGG PGKCFASGKH  180
VWLLDALKLS SDYCVRSFLA KSARIQTIVL ISTDAGVVEL GSVRSVPESL ELVHSIRATF  240
SSNSSLARVK PMAVALPVTS EKKDENGLFP NLGILDRVEG VPKIFGQELN NSGHVHTHFS  300
REKLAVRKME ERPSWEAYTN GNRTAFPGIR NGVHGFSWGN VQGVKQGIAT EIFGSQTNNL  360
QELVNGVRED FRINHYQSQK PMQMQIDFSG ATSRPNVIAR PLNADSEHSD VEASCRDERT  420
GTVEERRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG  480
DAIAYINELQ AKLKVMEAER ENLSGNSRDL SAFESNPNVE SQNRAPDVDI QAAHDEVVVR  540
VSCPLDSHPA SRVIQAFKDA QITVVESKLS TGNDMVFHTF VIKSQGSEQL TKEKLIAAFS  600
CESSSIQPLS SVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	426	434	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein