PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY45135.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25629.2 Da PI: 9.2239 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67 | 1.8e-21 | 18 | 64 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i k n qvtfskRr+g++KKA+ELS+LC++++a+i+fs+ +k + + GAY45135.1 18 IPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSF 64 7789999**********************************997766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MEMKKPCAGR QKIAISKIPK KNNLQVTFSK RRAGVFKKAS ELSTLCGVDI ALIVFSPANK 60 AFSFGHPNVD SILDLYLARN PNPPSESSTD RLIEAHRNAN IRELNMQLTQ VLHQLEVEKK 120 HGEVLSEIRK ASCRQCWWEA PINELGLHEL EQLKTAMEEL KKNVEQQANK ILIDSKNNPS 180 PFFGVNNQNI NPHHHQSKLP LGIPPSSNDA LPNFYSSGFG HYHDHQQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-56 | M-type_MADS family protein |