PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY45031.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 765aa MW: 84210.7 Da PI: 6.7913

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY45031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.7	1.5e-14	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++ + q++s+ qk+ GAY45031.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKKAVQIRSHAQKF 68 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence
MDTYSSGEDL VLKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKKAVQ 60 IRSHAQKFFS KLEKEALSKG VPIGQAIDID IPPPRPKRKP RNPYPRKTCT NAPMSQIGAK 120 DGKLRSSVSS LRCNQVLDLE KEPISDRPNG DEKPTYTIES QKDNCSEVFI LHQEAHCSSV 180 SSVNKNSMPT PVGLRDSCNL REFVPSLKEV VNQDETRESY VTVELKANEK FGKPDAKLAL 240 QDNGSSKPLN LENACPSHEK SVHGEKRDDV ADALPTAEVQ ATQNYPRHVN VHILDGSLGT 300 GTQSPSDMPM QESIFHPIGE VHGNPNLFTN PAASATTENE SNVPKSTHQS FPTFHPPFTQ 360 FRHDQDDYRS FLHISSAFSS LIVSTLLQNP AAHAAASFAA TFWPYTNMET SADSPTCPQG 420 GFLSRQMSSP PSMAAIAAAT VAAATAWWAA HGLLPLCAPF HAPFTCPPAC ATAVSSMDTA 480 QVPAAKTDKN DNTPPNPALK DHQPDLEYSE ALQAQNSASK SLTVLTSDSE ESASAKLKME 540 LKATDHEKNS EENELHDSNK TKNRKQVDRS SCGSNTPSSS EVETDALEKQ EKGKEESKEI 600 DPSLPATDPG NRRSRSSSNI TDSWKEVSEV GRLAFQALFS REVLPQSFSP PHDLKDKMQQ 660 DNVEDKQNGN KKDGDKSLFD LNSKTWGSCF GHQEVEKSTV SGVENNGGEG LLTIGLGHGK 720 LKARRTGFKP YKRCSVEAKE NRILNTGNQA EEKCPKRIRV EGATT

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence

MDTYSSGEDL VLKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKKAVQ  60
IRSHAQKFFS KLEKEALSKG VPIGQAIDID IPPPRPKRKP RNPYPRKTCT NAPMSQIGAK  120
DGKLRSSVSS LRCNQVLDLE KEPISDRPNG DEKPTYTIES QKDNCSEVFI LHQEAHCSSV  180
SSVNKNSMPT PVGLRDSCNL REFVPSLKEV VNQDETRESY VTVELKANEK FGKPDAKLAL  240
QDNGSSKPLN LENACPSHEK SVHGEKRDDV ADALPTAEVQ ATQNYPRHVN VHILDGSLGT  300
GTQSPSDMPM QESIFHPIGE VHGNPNLFTN PAASATTENE SNVPKSTHQS FPTFHPPFTQ  360
FRHDQDDYRS FLHISSAFSS LIVSTLLQNP AAHAAASFAA TFWPYTNMET SADSPTCPQG  420
GFLSRQMSSP PSMAAIAAAT VAAATAWWAA HGLLPLCAPF HAPFTCPPAC ATAVSSMDTA  480
QVPAAKTDKN DNTPPNPALK DHQPDLEYSE ALQAQNSASK SLTVLTSDSE ESASAKLKME  540
LKATDHEKNS EENELHDSNK TKNRKQVDRS SCGSNTPSSS EVETDALEKQ EKGKEESKEI  600
DPSLPATDPG NRRSRSSSNI TDSWKEVSEV GRLAFQALFS REVLPQSFSP PHDLKDKMQQ  660
DNVEDKQNGN KKDGDKSLFD LNSKTWGSCF GHQEVEKSTV SGVENNGGEG LLTIGLGHGK  720
LKARRTGFKP YKRCSVEAKE NRILNTGNQA EEKCPKRIRV EGATT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	101	RPKRKPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	1e-123	MYB_related family protein