PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44962.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 508aa MW: 56378.3 Da PI: 10.1348

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.6	3e-15	316	361	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ Er+RRd+iN+++ L+el+P++ K++Ka++Le+A++Y+k Lq GAY44962.1 316 HKRYERKRRDKINKKMRALQELIPNC-----NKVDKASVLEEAIDYLKTLQ 361 8999*******************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MSNQEFLELV WEDGQLRMRG SSKRTQKSTS SCIDHASRSS NARLENGGNT DTFPPKNENQ 60 HESLLEISYK SHFNAFSEHA TGYNIDYDDK LRKDSQVVPV HETTPTPTGN RQSRDSTPLK 120 RPRVKYSPNL LSLDVLKREP EKKREQPVNF SLFLRSPALR TSSRRGFSRA EPEKVQNKPR 180 LLSPAANGSA SVKGFQNQLN SADTNAELLQ PVPVTVPDVQ SEADYSRTSS LPAENTVKRK 240 LDAGKCIEPP VPSSSLCSLG ASNNNPACNT FNLKRRYEDT EVSACPCDQY EKKLERKAVT 300 VRGSKSNRKK RTPEVHKRYE RKRRDKINKK MRALQELIPN CNKVDKASVL EEAIDYLKTL 360 QFQVMMMSMG TGVCMPSMML PTGIIGMQQM HAVAPQMSHF PPMGIGMDGR MQMGAGCNPA 420 QFLMPPIPGA TAVPGIQMPG FPGQPLPMSM LRTPLGLMHK TNPVAGVSRA AASMEVKDSA 480 PLTNPGDSNQ NVEINKRNVE HHKIRPSA

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MSNQEFLELV WEDGQLRMRG SSKRTQKSTS SCIDHASRSS NARLENGGNT DTFPPKNENQ  60
HESLLEISYK SHFNAFSEHA TGYNIDYDDK LRKDSQVVPV HETTPTPTGN RQSRDSTPLK  120
RPRVKYSPNL LSLDVLKREP EKKREQPVNF SLFLRSPALR TSSRRGFSRA EPEKVQNKPR  180
LLSPAANGSA SVKGFQNQLN SADTNAELLQ PVPVTVPDVQ SEADYSRTSS LPAENTVKRK  240
LDAGKCIEPP VPSSSLCSLG ASNNNPACNT FNLKRRYEDT EVSACPCDQY EKKLERKAVT  300
VRGSKSNRKK RTPEVHKRYE RKRRDKINKK MRALQELIPN CNKVDKASVL EEAIDYLKTL  360
QFQVMMMSMG TGVCMPSMML PTGIIGMQQM HAVAPQMSHF PPMGIGMDGR MQMGAGCNPA  420
QFLMPPIPGA TAVPGIQMPG FPGQPLPMSM LRTPLGLMHK TNPVAGVSRA AASMEVKDSA  480
PLTNPGDSNQ NVEINKRNVE HHKIRPSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	308	324	RKKRTPEVHKRYERKRR
2	309	325	RKKRTPEVHKRYERKRR
3	320	325	ERKRRD
4	321	326	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46970.1	9e-37	bHLH family protein