PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44683.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 616aa MW: 70303.7 Da PI: 7.1015

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.4	3.7e-13	119	182	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ +e aL+++r+++e+++ + We+vs++++e g++rs+++Ckek+e+ ++ + +i+ +++ GAY44683.1 119 WSLDELIALLRIRSSLENWFPEL-----TWEHVSRRLEELGYKRSAEKCKEKFEEESRNFSNINYNKNY 182 ******************987.....9*****************************999877665 PP
2	trihelix	91.9	6.6e-29	468	555	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev aLi++r ++ ++ ++++ ++ plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql GAY44683.1 468 RWPRDEVFALINLRCNLYNNGEDKEgaaSRVPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDANKKR-SIDSRTCPYFHQLS 555 8************999999985333499***************************************8.78889*****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MFDEVPADQL HQFIAAASRA SVVPFPLSFS TSSSSSSLHL HHHHHHHHHG SSPFPASFDP 60 FNSTTTSQQV QQPHQLLHSL QQQKINEEKE ENRSSSSSLV GMNLEVVQRE GLIQKDPAWS 120 LDELIALLRI RSSLENWFPE LTWEHVSRRL EELGYKRSAE KCKEKFEEES RNFSNINYNK 180 NYRTLFSEFD DEEQELYHRG QNSPHGHNVA DEANEKLDQQ QPREEEEEVE EGDKIMEQEA 240 EHPRNDQTVA NKSSCYHHQD KEKLSKGKKK RKFREKNFER FKGFCEDIVK KLMAQQEEMH 300 NKLIEDLVKR DEEKVAREEA WKKQQIDRFN KELEIRASEQ AITSNRQATI IKFLTRFSSS 360 SSSSSSSTSE ESGVNKHKVP NYSIPNPLTT SSSLILAQNP NQTQNPRSNL APTSVPKKQT 420 SSTIAISPQN PSSAATQNKP LAPTSTPIQN SDSQKLITSD GKDDIGKRWP RDEVFALINL 480 RCNLYNNGED KEGAASRVPL WERISQGMSE LGYKRSAKRC KEKWENINKY FRKTKDANKK 540 RSIDSRTCPY FHQLSTLYNQ GTLVAPSDGT ENRPAALPEN HHSSSQGGNS STHSTMPVAQ 600 GEKNLVQVSP ALDFEF

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MFDEVPADQL HQFIAAASRA SVVPFPLSFS TSSSSSSLHL HHHHHHHHHG SSPFPASFDP  60
FNSTTTSQQV QQPHQLLHSL QQQKINEEKE ENRSSSSSLV GMNLEVVQRE GLIQKDPAWS  120
LDELIALLRI RSSLENWFPE LTWEHVSRRL EELGYKRSAE KCKEKFEEES RNFSNINYNK  180
NYRTLFSEFD DEEQELYHRG QNSPHGHNVA DEANEKLDQQ QPREEEEEVE EGDKIMEQEA  240
EHPRNDQTVA NKSSCYHHQD KEKLSKGKKK RKFREKNFER FKGFCEDIVK KLMAQQEEMH  300
NKLIEDLVKR DEEKVAREEA WKKQQIDRFN KELEIRASEQ AITSNRQATI IKFLTRFSSS  360
SSSSSSSTSE ESGVNKHKVP NYSIPNPLTT SSSLILAQNP NQTQNPRSNL APTSVPKKQT  420
SSTIAISPQN PSSAATQNKP LAPTSTPIQN SDSQKLITSD GKDDIGKRWP RDEVFALINL  480
RCNLYNNGED KEGAASRVPL WERISQGMSE LGYKRSAKRC KEKWENINKY FRKTKDANKK  540
RSIDSRTCPY FHQLSTLYNQ GTLVAPSDGT ENRPAALPEN HHSSSQGGNS STHSTMPVAQ  600
GEKNLVQVSP ALDFEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	6e-95	Trihelix family protein