PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44682.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 688aa MW: 78727.8 Da PI: 9.605

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44682.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.4	3.6e-13	191	253	2	69
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ +e aL+++r+++e+++ + We+vs++++e g++rs+++Ckek+e+ ++ + +i+ +++ GAY44682.1 191 WSLDELIALLRIRSSLENWFPEL-----TWEHVSRRLEELGYKRSAEKCKEKFEEESRNFSNINYNKN 253 ******************987.....9*****************************99987766 PP
2	trihelix	91.7	7.8e-29	540	627	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev aLi++r ++ ++ ++++ ++ plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql GAY44682.1 540 RWPRDEVFALINLRCNLYNNGEDKEgaaSRVPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDANKKR-SIDSRTCPYFHQLS 627 8************999999985333499***************************************8.78889*****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MPTNNFKRCD VTLLSSNGKG RPHWVPQKLM IRRLYNASLL APQKHQRGVR KKRKAKEKKR 60 GKLIKLVHKI NTMFDEVPAD QLHQFIAAAS RASVVPFPLS FSTSSSSSSL HLHHHHHHHH 120 HGSSPFPASF DPFNSTTTSQ QVQQPHQLLH SLQQQKINEE KEENRSSSSS LVGMNLEVVQ 180 REGLIQKDPA WSLDELIALL RIRSSLENWF PELTWEHVSR RLEELGYKRS AEKCKEKFEE 240 ESRNFSNINY NKNYRTLFSE FDDEEQELYH RGQNSPHGHN VADEANEKLD QQQPREEEEE 300 VEEGDKIMEQ EAEHPRNDQT VANKSSCYHH QDKEKLSKGK KKRKFREKNF ERFKGFCEDI 360 VKKLMAQQEE MHNKLIEDLV KRDEEKVARE EAWKKQQIDR FNKELEIRAS EQAITSNRQA 420 TIIKFLTRFS SSSSSSSSST SEESGVNKHK VPNYSIPNPL TTSSSLILAQ NPNQTQNPRS 480 NLAPTSVPKK QTSSTIAISP QNPSSAATQN KPLAPTSTPI QNSDSQKLIT SDGKDDIGKR 540 WPRDEVFALI NLRCNLYNNG EDKEGAASRV PLWERISQGM SELGYKRSAK RCKEKWENIN 600 KYFRKTKDAN KKRSIDSRTC PYFHQLSTLY NQGTLVAPSD GTENRPAALP ENHHSSSQGG 660 NSSTHSTMPV AQGEKNLVQV SPALDFEF

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MPTNNFKRCD VTLLSSNGKG RPHWVPQKLM IRRLYNASLL APQKHQRGVR KKRKAKEKKR  60
GKLIKLVHKI NTMFDEVPAD QLHQFIAAAS RASVVPFPLS FSTSSSSSSL HLHHHHHHHH  120
HGSSPFPASF DPFNSTTTSQ QVQQPHQLLH SLQQQKINEE KEENRSSSSS LVGMNLEVVQ  180
REGLIQKDPA WSLDELIALL RIRSSLENWF PELTWEHVSR RLEELGYKRS AEKCKEKFEE  240
ESRNFSNINY NKNYRTLFSE FDDEEQELYH RGQNSPHGHN VADEANEKLD QQQPREEEEE  300
VEEGDKIMEQ EAEHPRNDQT VANKSSCYHH QDKEKLSKGK KKRKFREKNF ERFKGFCEDI  360
VKKLMAQQEE MHNKLIEDLV KRDEEKVARE EAWKKQQIDR FNKELEIRAS EQAITSNRQA  420
TIIKFLTRFS SSSSSSSSST SEESGVNKHK VPNYSIPNPL TTSSSLILAQ NPNQTQNPRS  480
NLAPTSVPKK QTSSTIAISP QNPSSAATQN KPLAPTSTPI QNSDSQKLIT SDGKDDIGKR  540
WPRDEVFALI NLRCNLYNNG EDKEGAASRV PLWERISQGM SELGYKRSAK RCKEKWENIN  600
KYFRKTKDAN KKRSIDSRTC PYFHQLSTLY NQGTLVAPSD GTENRPAALP ENHHSSSQGG  660
NSSTHSTMPV AQGEKNLVQV SPALDFEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	54	QRGVRKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	6e-94	Trihelix family protein