PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44017.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 398aa MW: 44920.4 Da PI: 6.0842

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44017.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.4	8.3e-28	81	162	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk+k+++++ s +++y+++++ GAY44017.1 81 WVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGS---GSAKMSYYKEID 162 ******************************************************************84...556899*997 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MYLSEKPRPY LTEKPRPIDY YKDEAVAVAA AAAAAASSRD MIMEVAAASN GDLQPQQMIL 60 ADSSGGEDHE VRAPKKRAET WVQDETRILI AFRREMDGLF NTSKSNKHLW EQISAKMREK 120 GFDRSPTMCT DKWRNLLKEF KKTKHQDRGS GSAKMSYYKE IDEILKERSK NAQYKATSVA 180 NSANKVDTFM QFSDKGFDDT SISFGPVEAT GRPTLNLERR LDHDGHPLAI TTADAVAAAG 240 VPPWNWRDPP PGNGNLCGEG QSFGGKVISV KCGDYTRRIG IDGTPDAIKE AIKSAFGIRT 300 KRAFWLEDED QIVRCIDRDM PVGNYTLHLD EGLTIKVCLY DESDHISVHT EDKTFYTEED 360 YREFLARHGW TCLREFDGYR NVDNMDDLRP GAMYRGVT

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MYLSEKPRPY LTEKPRPIDY YKDEAVAVAA AAAAAASSRD MIMEVAAASN GDLQPQQMIL  60
ADSSGGEDHE VRAPKKRAET WVQDETRILI AFRREMDGLF NTSKSNKHLW EQISAKMREK  120
GFDRSPTMCT DKWRNLLKEF KKTKHQDRGS GSAKMSYYKE IDEILKERSK NAQYKATSVA  180
NSANKVDTFM QFSDKGFDDT SISFGPVEAT GRPTLNLERR LDHDGHPLAI TTADAVAAAG  240
VPPWNWRDPP PGNGNLCGEG QSFGGKVISV KCGDYTRRIG IDGTPDAIKE AIKSAFGIRT  300
KRAFWLEDED QIVRCIDRDM PVGNYTLHLD EGLTIKVCLY DESDHISVHT EDKTFYTEED  360
YREFLARHGW TCLREFDGYR NVDNMDDLRP GAMYRGVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein