PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY43943.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

RAV

Protein Properties

Length: 305aa MW: 34608.8 Da PI: 6.6231

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY43943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.5	1.6e-13	31	79	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAa+ ++ a+++++g GAY43943.1 31 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFIEEEEAARVYDTAALRFRG 79 89**9888.8*****3.....5***********************98 PP
2	B3	92.3	3.5e-29	164	256	1	88
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 f+kvltpsdv+k++r+v+pk+ ae+h +++ +++ l +ed++ ++W+++++y+ +s++yvltkGW++Fvk++g+k+gD+v F +++ s GAY43943.1 164 FEKVLTPSDVGKLNRMVIPKQQAEKHfalsSEIASKGVLLNFEDSTQKVWRLRYCYWSSSQSYVLTKGWSRFVKEKGVKAGDTVSFWRSNVgS 256 99***********************9997777899***********************************************8665544 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MASNSSSVDL DHDHNLSENG IDAESKKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF 60 IEEEEAARVY DTAALRFRGQ NAITNFRTSL ETDDEDDYME KIFLSSHSKA EIVDMLRKHT 120 YKHELEQSKQ NYACVGISCY NNSSGFSDLF GSNCFQETPV EFLFEKVLTP SDVGKLNRMV 180 IPKQQAEKHF ALSSEIASKG VLLNFEDSTQ KVWRLRYCYW SSSQSYVLTK GWSRFVKEKG 240 VKAGDTVSFW RSNVGSNSKL FIDCKLQQNG NGSGFEEMQS QVPNIGVVRL FGVNILEDPN 300 NLCCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-110	RAV family protein