PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY43900.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 279aa MW: 31791.6 Da PI: 7.0045

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY43900.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.8	1.6e-07	165	219	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++iN+++ L++l+P + + + + a +Le+ ++Y++sLq GAY43900.1 165 SHSIAERVRREKINKKMRCLQDLVPGCHkheWVNVQDMGMAGMLEEIINYVHSLQ 219 8************************974343222223445666666666666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MADFRENTQS LRASQAFTEL GVNMEMVKHF AELKPSMLEY FNTPNFSLAT PLAHQQPEFL 60 AGCSYNNSFS NFQTDSRIVV PRVRTVRGNE DVLYESSRRE VTEQSTSISK TMCSSASTSE 120 TQGDTYKNKK IRSRRGKKVS SNEKEEGNPE RIIHVRAKRG QATDSHSIAE RVRREKINKK 180 MRCLQDLVPG CHKHEWVNVQ DMGMAGMLEE IINYVHSLQN QVEFLSMELA AACSSNDLNI 240 ETESSRKTQG TNSHEALEME IWAKEAYGEY TSFHSTWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	7e-46	bHLH family protein