PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY43840.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 299aa MW: 34305.6 Da PI: 7.2106

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY43840.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.4	3.2e-15	225	250	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaH+ GAY43840.1 225 WKTELCNKWQETGSCPYGDYCQFAHD 250 8************************7 PP
2	zf-CCCH	27.3	6.1e-09	263	288	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr + +G+C+yG rC+F H+ GAY43840.1 263 YKTEVCRMVLTGGICPYGHRCHFRHS 288 9**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MEKEIRDESS PSDAKTSMTT ATATTSSSLT SDFDFDFDFD FDVDFSSIYN SVFPPRSSLS 60 PSLVTDDRHR IATEHRLQQA RLILEYQQLC DHYDLCFSRL QAITRELETL RQQNADLRLA 120 NARLLKIITG SFHRMTEDIP PGFAPNNVME PNRLEKRTVL ERESFPKSIS VRSSGCTIKP 180 KQANASSGTS RPRAQRVYVP PGNNKREEAE EAKAVELEAY NQGMWKTELC NKWQETGSCP 240 YGDYCQFAHD FTELRPVIRH PKYKTEVCRM VLTGGICPYG HRCHFRHSLT EQERIPVPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	4e-65	C3H family protein