PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY43590.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 299aa MW: 33416.6 Da PI: 7.4784

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY43590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.4e-19	133	187	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k GAY43590.1 133 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 187 788899***********************************************98 PP
2	HD-ZIP_I/II	129.6	1.2e-41	133	222	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l GAY43590.1 133 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 222 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MAEKDDLGLS LSLSFPQNHH SLQLNLMPSS ACSTSPSGFS LQKTPWNEAL FPSSDPNSES 60 CRAETRSFLR GIDVNRLPSH ADNEEEVGVS SPNSTISSVS GKRSEREPNG DELEMERACS 120 RGISDDEDGD TSRKKLRLSK DQSAILEESF KEHNTLNPKQ KLALAKQLGL RPRQVEVWFQ 180 NRRARTKLKQ TEVDCEFLKR CCENLTEENR RLQKEVQELR ALKLSPQFYM QMTPPTTLTM 240 CPSCERVAVP PSAAASAVDP ARPTHQMAAP NHHRPIPINP WAPAAAIPHG PFDQLRPRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	138	SRKKLRL
2	182	190	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-102	HD-ZIP family protein