PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY42754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 230aa MW: 26404 Da PI: 7.0964 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 68 | 120 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq e Le +F +++++ +++ +LA++lgL+ rqV vWFqNrRa++k GAY42754.1 68 KRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 5689***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 114.4 | 6.7e-37 | 67 | 157 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+l++eq++lLE++F +e+kLe++rK +la eLgl+prqvavWFqnrRAR ktk++E+ y++Lk+a+++++ e++rLe+ev++L+e+l+ GAY42754.1 67 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLS 157 9**************************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MIREMIVTNT NHQVEDNKSN MVLLSQFYPS DVLTPTGIVP QQGEPSKPKR RQRKRNTNGN 60 GGFRALKKRK LTAEQAELLE MHFGNEHKLE SDRKDKLAAE LGLDPRQVAV WFQNRRARDK 120 TKKIEETYAT LKTAHENVVV EKTRLESEVA TLKEKLSVAE KEIKKMSELI EGISLNNPSA 180 TIPTDMDTVD SPFTLDPFAS NLGWFDYEDL LYLLQQNYIS AAEWLLLHTY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 70 | KRRQRKRNTNGNGGFRALKKRK |
2 | 53 | 74 | KRRQRKRNTNGNGGFRALKKRK |
3 | 67 | 96 | KKRKLTAEQAELLEMHFGNEHKLESDRKDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 4e-62 | HD-ZIP family protein |