PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY42245.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 425aa    MW: 47799.9 Da    PI: 6.1421
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY42245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS467.95.6e-143244211373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++v++g+le+a+ +L ++s+laspdgd+mqR+aayfteALa+r+++s+++l kal++++ s  ++see+ ++klf++++P+lk++++++N
  GAY42245.1  24 LIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRIS--SVSEEMLVRKLFFDMFPFLKVAFVLTN 120
                 689*************************************************************999987..59************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI ea+ege+ vH+iD+++ +++QW+aL+qaL++Rpegpp+lRiTg+++    +ke l ++++rL++ Ae+l++pf+fn  v+++le+l++++Lrvk+
  GAY42245.1 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNS-VVSKLENLDFDKLRVKT 214
                 **************************************************....9**************************.799************** PP

        GRAS 199 gEalaVnlvlqlhrll....................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                 gEala+++vlqlh+ll                                    +     + + d++L+ +++lsPk++vv+eq+++hn+ +++er+leal
  GAY42245.1 215 GEALAISSVLQLHSLLaaddyaslialknsllangygysqspdsvsssplspN----ASAKMDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEAL 309
                 ********************************************997653222....2225788*********************************** PP

        GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                 + y+alfd+le++++r+s er kvE++l+g+ei+n++aceg+er+erhe+lekW +r++ a F++vpls+  + qa++ll+ ++ dgyr+ e++ ++++
  GAY42245.1 310 YSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLI 408
                 *************************************************************************************************** PP

        GRAS 361 gWkdrpLvsvSaW 373
                 +W+drpL+svSaW
  GAY42245.1 409 CWHDRPLFSVSAW 421
                 ************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MSPSLGSPYQ WLRELKSEER GLYLIHLLLS CANHVANGSL ENANLALDQI SQLASPDGDT  60
MQRIAAYFTE ALAQRILKSW PGLHKALNST RISSVSEEML VRKLFFDMFP FLKVAFVLTN  120
QAIIEAMEGE KVVHVIDLNA AEPAQWIALI QALSTRPEGP PHLRITGIHP QKEVLDQMAH  180
RLTEEAEKLD IPFQFNSVVS KLENLDFDKL RVKTGEALAI SSVLQLHSLL AADDYASLIA  240
LKNSLLANGY GYSQSPDSVS SSPLSPNASA KMDSFLNSLW GLSPKIMVVT EQDSNHNGLT  300
LMERLLEALY SYAALFDCLE SSVSRTSMER LKVEKMLFGE EIKNIIACEG FERKERHEKL  360
EKWIQRFDLA CFGNVPLSYC GMLQARRLLQ SYNCDGYRIA EDNRCVLICW HDRPLFSVSA  420
WSCRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein