PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41903.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 464aa MW: 50731.5 Da PI: 8.3198

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41903.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.9	1.2e-15	295	340	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq GAY41903.1 295 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 340 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MSQCVPSWDL DENYPNNCRA SLRSRSNSTA PDVPMLELDY EVAELTWENG QLAMHGLGPP 60 RVPAKAAANN PSPTKNTCSG TLESIVNQAT SLPQAQRNGK PPLLDEFATA PCCFHQQRPS 120 MTTMDALVPC SNRRSEERTT QVMDPAPRVG GTRSIRVGSC SGPVPLPIPD STKDDDVLNG 180 KRARVARVPV APEWSSRDQS FSGSATFGRE SQRVSVTHDT YDMDMDMGVG FTGTSVGSPE 240 NTSSAKQGNK ATTADDHDSV CHSRPLREAG DEEYKKKGNG KSTISTKRSR AAAIHNQSER 300 KRRDKINQRM KTLQKLVPNS SKTDKASMLD EVIEYLKQLQ AQVQVMSRMN MPPMMLPMAM 360 QQQLQMSMLS SMGMGMGMGM GMGVMDMNSM SRPNITSMPP LLHPFLPLAS WDGLGDRLQA 420 SPMTDPLSTF LACQPQAASM DAYNRMAAMY QQMQQQPPAS SSKS

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MSQCVPSWDL DENYPNNCRA SLRSRSNSTA PDVPMLELDY EVAELTWENG QLAMHGLGPP  60
RVPAKAAANN PSPTKNTCSG TLESIVNQAT SLPQAQRNGK PPLLDEFATA PCCFHQQRPS  120
MTTMDALVPC SNRRSEERTT QVMDPAPRVG GTRSIRVGSC SGPVPLPIPD STKDDDVLNG  180
KRARVARVPV APEWSSRDQS FSGSATFGRE SQRVSVTHDT YDMDMDMGVG FTGTSVGSPE  240
NTSSAKQGNK ATTADDHDSV CHSRPLREAG DEEYKKKGNG KSTISTKRSR AAAIHNQSER  300
KRRDKINQRM KTLQKLVPNS SKTDKASMLD EVIEYLKQLQ AQVQVMSRMN MPPMMLPMAM  360
QQQLQMSMLS SMGMGMGMGM GMGVMDMNSM SRPNITSMPP LLHPFLPLAS WDGLGDRLQA  420
SPMTDPLSTF LACQPQAASM DAYNRMAAMY QQMQQQPPAS SSKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	299	304	ERKRRD
2	300	305	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-96	bHLH family protein