PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41559.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 290aa MW: 33470.4 Da PI: 4.8668

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	83	136	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t q+++Le+ Fe ++++ +++ +LA++lgL+ rq+ vWFqNrRa+ k GAY41559.1 83 KKRRLTVVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 136 56689***********************************************98 PP
2	HD-ZIP_I/II	121.5	4.1e-39	82	174	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ qvk+LE++Fe ++kLep+rKv+la+eLglqprq+avWFqnrRAR k+k+lE+dy Lk++ydal+ + ++L++e+e+L++el+e GAY41559.1 82 EKKRRLTVVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRE 174 69***************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MDLDVELIKQ SMKRFSSSDS FDALITVYKS AVFLFMGYET FDHFHEDKTS TKRKQIYGRE 60 FQAMMDCLEE EDCREEASQA TEKKRRLTVV QVKALEKNFE VDNKLEPDRK VKLAEELGLQ 120 PRQIAVWFQN RRARLKSKEL ERDYGLLKAN YDALRLDYNN LQQENEALTA ELRELKAKLC 180 QENEETSHAV EAEAPVSEQS KNHVSSENAN AQLLTSPPSF SSLFTGSSSS SHPSMNWVQF 240 SDSRTILSNV YQQPQLVKVE EQSLLFNPED PCNIFSVDQA PTLQWYFTGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	112	KKRRLTVVQVKALEKNFEVDNKLEPDRKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.1	2e-49	HD-ZIP family protein