PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41548.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 332aa MW: 36770.2 Da PI: 6.4065

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.3e-11	129	179	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a++ ++++k+L GAY41548.1 129 QRMTHIAVERNRRKQMNEYLAILRSLMPPS---YVQRGDQASVIGGSINFVKEL 179 79***************************9...899999999999999998888 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MALEAVVYPK PQDPFGYSCN KDIYSLPGEG GGAWGYDFCF QQEDRTLLGI IDANIIEQGL 60 HANWDSSSSP TIMQHANESW GPNSSPDAYA ADQTLSAGSF SPAAAATTGG RRKRRRTKSS 120 KNKEEIENQR MTHIAVERNR RKQMNEYLAI LRSLMPPSYV QRGDQASVIG GSINFVKELE 180 QLLQSMEAQK RNTSQLLKAG DNGVSSPFAN FFTFPQYSTR SSQSNNFAPD HESSMTENVA 240 DIEVNMAESH ANIKILTKKR PRQLLKMVAS FQNLRLSVLH LNVSTVDQMV LYSVSVKVEE 300 GSQLNTVDEI AAAEWIKNVH ACGNANLELE GM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	116	RKRRR
2	112	117	RKRRRT
3	130	141	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-86	bHLH family protein