PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41302.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 418aa MW: 47031.4 Da PI: 6.9426

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.5e-09	76	128	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ Lr llP + ++K s ++ + v+Y+k+L+ GAY41302.1 76 KKLMHRDVERQRRQEMATLYASLRALLPLEF--IKGKRSISDQMNEGVNYVKYLE 128 5789***********************65..******************96 PP
2	HLH	27.4	6.2e-09	252	303	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++++h +E+ RR+++ + Lr+llP ++K s ++ +Av+Y+k+L GAY41302.1 252 KKMTHRDIEKLRRQEMSVLHASLRSLLPLeY---IKGKRSMSDHMNEAVNYVKDL 303 789************************77...*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MFPLHSGDEL FFKVSSNSHQ QDKIPQDLIS GHASEASSII TNDMGKSHRG QSFSMETDKI 60 PSDNYNSNNS NYNNNKKLMH RDVERQRRQE MATLYASLRA LLPLEFIKGK RSISDQMNEG 120 VNYVKYLEKK IKELGVKRDE LKRLSNLSIS ASQIETSDQN DTSPSNRFVV HQSLVGIEIA 180 YSCGYLEQEL PLSKVLEVLL DEGLCVVNCV STRVDERLLH TIQAEVKDPS SFSLSDLQQK 240 LTQVNTNDSQ KKKMTHRDIE KLRRQEMSVL HASLRSLLPL EYIKGKRSMS DHMNEAVNYV 300 KDLKNKINEL SSRRDELQKE LASSVSDSGS SSNNCTPSRV VIHSCLGGLV VMISSGCREQ 360 GFPVSRVLEV LIEQGLDVVN CVSTKVNQVL LLTIHTEVSD TTCIDLPGLQ QKLTEIFI

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MFPLHSGDEL FFKVSSNSHQ QDKIPQDLIS GHASEASSII TNDMGKSHRG QSFSMETDKI  60
PSDNYNSNNS NYNNNKKLMH RDVERQRRQE MATLYASLRA LLPLEFIKGK RSISDQMNEG  120
VNYVKYLEKK IKELGVKRDE LKRLSNLSIS ASQIETSDQN DTSPSNRFVV HQSLVGIEIA  180
YSCGYLEQEL PLSKVLEVLL DEGLCVVNCV STRVDERLLH TIQAEVKDPS SFSLSDLQQK  240
LTQVNTNDSQ KKKMTHRDIE KLRRQEMSVL HASLRSLLPL EYIKGKRSMS DHMNEAVNYV  300
KDLKNKINEL SSRRDELQKE LASSVSDSGS SSNNCTPSRV VIHSCLGGLV VMISSGCREQ  360
GFPVSRVLEV LIEQGLDVVN CVSTKVNQVL LLTIHTEVSD TTCIDLPGLQ QKLTEIFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	2e-49	bHLH family protein