PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41301.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 406aa MW: 45701 Da PI: 6.5116

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.5e-09	76	128	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ Lr llP + ++K s ++ + v+Y+k+L+ GAY41301.1 76 KKLMHRDVERQRRQEMATLYASLRALLPLEF--IKGKRSISDQMNEGVNYVKYLE 128 5789***********************65..******************96 PP
2	HLH	25.3	2.8e-08	242	291	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++h +E+ RR+++ + Lr+llP ++K s ++ +Av+Y+k+L GAY41301.1 242 MTHRDIEKLRRQEMSVLHASLRSLLPLeY---IKGKRSMSDHMNEAVNYVKDL 291 58***********************77...*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MFPLHSGDEL FFKVSSNSHQ QDKIPQDLIS GHASEASSII TNDMGKSHRG QSFSMETDKI 60 PSDNYNSNNS NYNNNKKLMH RDVERQRRQE MATLYASLRA LLPLEFIKGK RSISDQMNEG 120 VNYVKYLEKK IKELGVKRDE LKRLSNLSIS ASQIETSDQN DTSPSNRFVV HQSLVGIEIA 180 YSCGYLEQEL PLSKVLEVLL DEGLCVVNCV STRVDERLLH TIQAELNNVV PKFDADATIW 240 MMTHRDIEKL RRQEMSVLHA SLRSLLPLEY IKGKRSMSDH MNEAVNYVKD LKNKINELSS 300 RRDELQKELA SSVSDSGSSS NNCTPSRVVI HSCLGGLVVM ISSGCREQGF PVSRVLEVLI 360 EQGLDVVNCV STKVNQVLLL TIHTEVSDTT CIDLPGLQQK LTEIFI

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MFPLHSGDEL FFKVSSNSHQ QDKIPQDLIS GHASEASSII TNDMGKSHRG QSFSMETDKI  60
PSDNYNSNNS NYNNNKKLMH RDVERQRRQE MATLYASLRA LLPLEFIKGK RSISDQMNEG  120
VNYVKYLEKK IKELGVKRDE LKRLSNLSIS ASQIETSDQN DTSPSNRFVV HQSLVGIEIA  180
YSCGYLEQEL PLSKVLEVLL DEGLCVVNCV STRVDERLLH TIQAELNNVV PKFDADATIW  240
MMTHRDIEKL RRQEMSVLHA SLRSLLPLEY IKGKRSMSDH MNEAVNYVKD LKNKINELSS  300
RRDELQKELA SSVSDSGSSS NNCTPSRVVI HSCLGGLVVM ISSGCREQGF PVSRVLEVLI  360
EQGLDVVNCV STKVNQVLLL TIHTEVSDTT CIDLPGLQQK LTEIFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	5e-49	bHLH family protein