PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41295.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 922aa MW: 103829 Da PI: 7.1281

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41295.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.4	4.1e-09	246	305	21	81
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 + r+k ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y GAY41295.1 246 STRAKTRADKDREVAEFLQRHGVNRDAKTSGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 305 556788899999*************************************9965555.3445 PP

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence
MGDNKGDTTK KQQSQQQPQQ LQQQQQQPQQ QQLSSSPKNP LEESTEKGQH HHQQPPAVVV 60 TGAPYISAPL YVPIGPTSSS PFEQQFEPVN PKRQRYNSSQ WKLLPSPSQQ QQQKQQAQMA 120 ILTTESSPSP TTLPITNPQS QAHTTTASSS DTASSPPHSP IPSLSAASGQ ETNRPELLGE 180 QFHPQFRKGK YVSPVWKPNE MLWLARAWRI QYQGGGGSNG SGSSSRVDHH QPESTGQGEV 240 AAAAQSTRAK TRADKDREVA EFLQRHGVNR DAKTSGTKWD NMLGEFRKVY EWERGGEREQ 300 VGKSYFRLSP YERKLHRLPA SFDEEVFEEL SQFMGSRMRS TSQSRAASSV FVSSDHDNRS 360 TRALPPPPPF KEDELSLSAR AKQLVMTSGG EAFFHGGRGS LLGFESSLDV GSKEIRRIGR 420 IRMTWEESVS LWAEEGEHQR GRIKLQGSSF LNADELTFFD DAMVACNMEA FEEGTLRGFS 480 VDRFVPGQQV KVFGRRKSSS GSASASSAGF FERVQFPFTE PSIRFTPWEY QDPSDYYVGC 540 LRVPPTTLPS LFELSWHLQE PPPEEFRFPI RKDVYRDLPQ GKEIFFTTST ELLDCRAITY 600 DILSPIVRGN NPSLSFSTAA SRDSFIGLWD DCINRVVSKF CSSEMVIVRK PSSSSISSPE 660 PLQDQWPNVT GFVRNLCLWR GEETDQLKEG QLDPSSSIVE KLLWTYMDLP YLFGYYAVGY 720 IVTFCALSRS QDRVVRTDLY SLDLSSPVER LKALIPCYRI AGLLPLLADR CFNSSSSIIS 780 NGGGGYKQYP FSDFERIDLG SGNIIEMTPN TVTRFFSSKR KWAAVKQIYD FLDHRIPHAE 840 AIYESSEKDL ALVFKPRGCK LKPTSCEQLV EALKYVTKAL VALHDLSFMH KDLSWDKVMR 900 RSDRENEWFV SGFDEAASVN MF

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence

MGDNKGDTTK KQQSQQQPQQ LQQQQQQPQQ QQLSSSPKNP LEESTEKGQH HHQQPPAVVV  60
TGAPYISAPL YVPIGPTSSS PFEQQFEPVN PKRQRYNSSQ WKLLPSPSQQ QQQKQQAQMA  120
ILTTESSPSP TTLPITNPQS QAHTTTASSS DTASSPPHSP IPSLSAASGQ ETNRPELLGE  180
QFHPQFRKGK YVSPVWKPNE MLWLARAWRI QYQGGGGSNG SGSSSRVDHH QPESTGQGEV  240
AAAAQSTRAK TRADKDREVA EFLQRHGVNR DAKTSGTKWD NMLGEFRKVY EWERGGEREQ  300
VGKSYFRLSP YERKLHRLPA SFDEEVFEEL SQFMGSRMRS TSQSRAASSV FVSSDHDNRS  360
TRALPPPPPF KEDELSLSAR AKQLVMTSGG EAFFHGGRGS LLGFESSLDV GSKEIRRIGR  420
IRMTWEESVS LWAEEGEHQR GRIKLQGSSF LNADELTFFD DAMVACNMEA FEEGTLRGFS  480
VDRFVPGQQV KVFGRRKSSS GSASASSAGF FERVQFPFTE PSIRFTPWEY QDPSDYYVGC  540
LRVPPTTLPS LFELSWHLQE PPPEEFRFPI RKDVYRDLPQ GKEIFFTTST ELLDCRAITY  600
DILSPIVRGN NPSLSFSTAA SRDSFIGLWD DCINRVVSKF CSSEMVIVRK PSSSSISSPE  660
PLQDQWPNVT GFVRNLCLWR GEETDQLKEG QLDPSSSIVE KLLWTYMDLP YLFGYYAVGY  720
IVTFCALSRS QDRVVRTDLY SLDLSSPVER LKALIPCYRI AGLLPLLADR CFNSSSSIIS  780
NGGGGYKQYP FSDFERIDLG SGNIIEMTPN TVTRFFSSKR KWAAVKQIYD FLDHRIPHAE  840
AIYESSEKDL ALVFKPRGCK LKPTSCEQLV EALKYVTKAL VALHDLSFMH KDLSWDKVMR  900
RSDRENEWFV SGFDEAASVN MF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-07	Trihelix family protein