PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40842.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ARF

Protein Properties

Length: 719aa MW: 78965.7 Da PI: 7.5716

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	79.9	2.7e-25	143	244	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k+ltpsd++++g +++pk++a+e+ +++++ ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv +++L +gD+++F + ++el+ GAY40842.1 143 FSKKLTPSDTSTHGGFSVPKRHADEClppldmSKDPPL-QELVAKDLHGLEWRIRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLR--GGDGELR 238 88***************************7445545.59*********************************************3..479999 PP EEEE-S CS B3 94 vkvfrk 99 v+v+r+ GAY40842.1 239 VGVRRA 244 ***996 PP
2	Auxin_resp	94.7	1.4e-31	269	351	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha+st++ F+v+Y+P++s++eF v++++++k+ ++ +s+G+Rf+m e+++++ +r++Gtvvg++d+d +rWp S+Wr+Lk GAY40842.1 269 AFHAISTGTRFTVYYHPWTSPAEFLVPFSQYMKSAEIDYSIGTRFRMVSEGKECADQRIAGTVVGTEDVDHIRWPASEWRCLK 351 689******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MAVVGEEGKA SGSRRMAAHH RKHMDDALPT KHKPAEAGGK NELYNELWRA CAGPLVYVPR 60 VGDIVYYFLQ GHMEQVEAYN SQDDKAELPI YNLPPKILCE VAEPGTDEVF AQITLLPRPE 120 IDELSLEVGN SPPLPPKLNV CSFSKKLTPS DTSTHGGFSV PKRHADECLP PLDMSKDPPL 180 QELVAKDLHG LEWRIRHIYR GQPKRHLLTS GWSVFVTSKK LVAGDVCIFL RGGDGELRVG 240 VRRAMKLQNN ASTSVISSLS MQHGILAGAF HAISTGTRFT VYYHPWTSPA EFLVPFSQYM 300 KSAEIDYSIG TRFRMVSEGK ECADQRIAGT VVGTEDVDHI RWPASEWRCL KVKWDATTDS 360 ITRPARVSPW NIEPIERTHK RPASVQHQQK RLRPNDASSP WFSSLFSNGV FQGQENRVTG 420 VKALGAAKTP LLPSLVRPPN PVWAQMQSGL ENKLKFPMHD PFYMCLNRMV SLPGGSLMSP 480 GLSNHWPASP FAPYEVCETA AQSKNLSVPN ASSENSGSQM CMALELKDEN RTPLAQPNGG 540 SRYMLFGVNL VNSPPELPSP QMATSNELES PCSVPPTSQS SISETIQVSE PSKSVSGILS 600 EKQCKNCYVS RSCTKVIKFG TALGRSVDLT QFHGYDELIS ELDQMFDFNG SLIDGNSGFH 660 IAYMDDEGDM MLGLSVCGTK NVHLPKGRHR RGDSKLTKSN TSSVAFSGGV VAATIDAAT

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MAVVGEEGKA SGSRRMAAHH RKHMDDALPT KHKPAEAGGK NELYNELWRA CAGPLVYVPR  60
VGDIVYYFLQ GHMEQVEAYN SQDDKAELPI YNLPPKILCE VAEPGTDEVF AQITLLPRPE  120
IDELSLEVGN SPPLPPKLNV CSFSKKLTPS DTSTHGGFSV PKRHADECLP PLDMSKDPPL  180
QELVAKDLHG LEWRIRHIYR GQPKRHLLTS GWSVFVTSKK LVAGDVCIFL RGGDGELRVG  240
VRRAMKLQNN ASTSVISSLS MQHGILAGAF HAISTGTRFT VYYHPWTSPA EFLVPFSQYM  300
KSAEIDYSIG TRFRMVSEGK ECADQRIAGT VVGTEDVDHI RWPASEWRCL KVKWDATTDS  360
ITRPARVSPW NIEPIERTHK RPASVQHQQK RLRPNDASSP WFSSLFSNGV FQGQENRVTG  420
VKALGAAKTP LLPSLVRPPN PVWAQMQSGL ENKLKFPMHD PFYMCLNRMV SLPGGSLMSP  480
GLSNHWPASP FAPYEVCETA AQSKNLSVPN ASSENSGSQM CMALELKDEN RTPLAQPNGG  540
SRYMLFGVNL VNSPPELPSP QMATSNELES PCSVPPTSQS SISETIQVSE PSKSVSGILS  600
EKQCKNCYVS RSCTKVIKFG TALGRSVDLT QFHGYDELIS ELDQMFDFNG SLIDGNSGFH  660
IAYMDDEGDM MLGLSVCGTK NVHLPKGRHR RGDSKLTKSN TSSVAFSGGV VAATIDAAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	1e-150	ARF family protein