PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40707.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 689aa MW: 76333.2 Da PI: 4.8124

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.1e-14	487	533	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ GAY40707.1 487 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 533 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence
MDAPPPSSRL QSMLQEAVQS VQWTYSLFWQ ICPQQGILIW GDGYYNGAIK TRKTVQPMEV 60 SAEEASLQRS QQLRELYESL SAGETNQPTR RPSAALSPED LTESEWFYLM CVSFSFPSGV 120 GLPGKAYARQ QHVWLTGANE VDSKTFSRAI LAKTVVCIPF LDGVVELGTT EKVPEDLALV 180 QHVKSLFIDD HQGHLHPPKP ALSEHSTSNP DTSSCHLRFH SQPMSPMCAA VNDDPPVNAN 240 QGEDDDEEED HDDDDEEQDQ SDSEAETGRN SRQGAADQIP EAVVPPVTEP NELMQLDMSE 300 DIRLGSPDDG SNNLDSDFHL LAVSQGVNPA DDQQQRGDSH RAESSRTWPM ALQDPVMISS 360 SLQLPPSGSG QIPPEEELTP EDTHYSQTIS TILQKQPTRW AKSSYVTYSS TQSAFAKWTD 420 RSDHLLAVPV PVEGTSQWVL KYVLFTVPYL HGKYRDENSP KLGDVGGDPA SRFRKGTGTP 480 QDEMSANHVL AERRRREKLN ERFIILRSLV PFVTKMDKAS ILGDTIEYVK QLRKQIQDLE 540 SRNINNQILE GDQRSRSADG SKDQRVLDRN ARVGSGKRKL RKVEGSGGGA KPKSVDSPPS 600 PVATSVQVSI IESDALVELQ CGNKEGLLLD IMQMLRELLI EVTAVQSFLT NGVFTAQLRA 660 KVKDNVNGKK ASIVEVKRAI NQIIPQYVN

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence

MDAPPPSSRL QSMLQEAVQS VQWTYSLFWQ ICPQQGILIW GDGYYNGAIK TRKTVQPMEV  60
SAEEASLQRS QQLRELYESL SAGETNQPTR RPSAALSPED LTESEWFYLM CVSFSFPSGV  120
GLPGKAYARQ QHVWLTGANE VDSKTFSRAI LAKTVVCIPF LDGVVELGTT EKVPEDLALV  180
QHVKSLFIDD HQGHLHPPKP ALSEHSTSNP DTSSCHLRFH SQPMSPMCAA VNDDPPVNAN  240
QGEDDDEEED HDDDDEEQDQ SDSEAETGRN SRQGAADQIP EAVVPPVTEP NELMQLDMSE  300
DIRLGSPDDG SNNLDSDFHL LAVSQGVNPA DDQQQRGDSH RAESSRTWPM ALQDPVMISS  360
SLQLPPSGSG QIPPEEELTP EDTHYSQTIS TILQKQPTRW AKSSYVTYSS TQSAFAKWTD  420
RSDHLLAVPV PVEGTSQWVL KYVLFTVPYL HGKYRDENSP KLGDVGGDPA SRFRKGTGTP  480
QDEMSANHVL AERRRREKLN ERFIILRSLV PFVTKMDKAS ILGDTIEYVK QLRKQIQDLE  540
SRNINNQILE GDQRSRSADG SKDQRVLDRN ARVGSGKRKL RKVEGSGGGA KPKSVDSPPS  600
PVATSVQVSI IESDALVELQ CGNKEGLLLD IMQMLRELLI EVTAVQSFLT NGVFTAQLRA  660
KVKDNVNGKK ASIVEVKRAI NQIIPQYVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	492	497	ERRRRE
2	493	498	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	5e-95	bHLH family protein