PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40461.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 630aa MW: 71493 Da PI: 8.7883

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.2	2.2e-13	353	436	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea ++ rl+rg l++++W+ev++ + re g+ +++ +qCk++++ l+k+yk +k+ s++p++ +l+ GAY40461.1 353 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVnsRENGVkpKKTDIQCKNRIDTLKKKYKIEKAKPPP------SKWPFYYRLD 436 7***********************************998889876789***************9998886......5799999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence
MSLLRKLPTK FLIPQSVLVT RSFTKSGAFP DEPTSAYYDD LVNAAGHERD LETVRYLLNK 60 RARDCCFNTA NTFNFITNTE NSLSVLSDLC RTLARLDKGF PRKSAYDTLI ARLCKLKKID 120 EALRVVDIMA EGGFGLSAIT FHPILSVLTR GKRMEEAWGL MEVMTEIRVS PDLTAYNYLL 180 TAYCFKGNLT ATSGVLKKME EEKLGADART YDALVLGACR AGRVEEAFVL LRRMVDDGQS 240 VLYSTYAHVM GALLRLGYYA QAVKFVMVCG GRDIKLDTEL FGSLGSKLIG LERFNEANFI 300 LKEMNKRDLK MGFKLRDYYE INVNNAAREM ELRGSHNVRG THAATTGGGR EDCWSEGATG 360 TLIEAWGDRY VRLNRGHLRQ KDWKEVAESV NSRENGVKPK KTDIQCKNRI DTLKKKYKIE 420 KAKPPPSKWP FYYRLDSLIG NDAVSSKKPA NITLRVKSKP RTSFVGRSVS TENDNLSSDG 480 EADDDGDDDE IVVKKVHRME DVDLSDGAAC RELARAILKF GEIYERIESA KQKQMMELEK 540 ERLEFIKDVE CERMNMFMGA QLEIQKSKRK QRPASSEGTK ELWKDILLLS PCDSLPTIHE 600 IQLMLRNSKY NHQLVENRYL DGNHLYTPQV

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence

MSLLRKLPTK FLIPQSVLVT RSFTKSGAFP DEPTSAYYDD LVNAAGHERD LETVRYLLNK  60
RARDCCFNTA NTFNFITNTE NSLSVLSDLC RTLARLDKGF PRKSAYDTLI ARLCKLKKID  120
EALRVVDIMA EGGFGLSAIT FHPILSVLTR GKRMEEAWGL MEVMTEIRVS PDLTAYNYLL  180
TAYCFKGNLT ATSGVLKKME EEKLGADART YDALVLGACR AGRVEEAFVL LRRMVDDGQS  240
VLYSTYAHVM GALLRLGYYA QAVKFVMVCG GRDIKLDTEL FGSLGSKLIG LERFNEANFI  300
LKEMNKRDLK MGFKLRDYYE INVNNAAREM ELRGSHNVRG THAATTGGGR EDCWSEGATG  360
TLIEAWGDRY VRLNRGHLRQ KDWKEVAESV NSRENGVKPK KTDIQCKNRI DTLKKKYKIE  420
KAKPPPSKWP FYYRLDSLIG NDAVSSKKPA NITLRVKSKP RTSFVGRSVS TENDNLSSDG  480
EADDDGDDDE IVVKKVHRME DVDLSDGAAC RELARAILKF GEIYERIESA KQKQMMELEK  540
ERLEFIKDVE CERMNMFMGA QLEIQKSKRK QRPASSEGTK ELWKDILLLS PCDSLPTIHE  600
IQLMLRNSKY NHQLVENRYL DGNHLYTPQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	9e-65	Trihelix family protein